Hi Freesurfers,
I am running recon-all -autorecon1 and I have an error like this:
/libdisk/tmp_EMM/subj/mri /libdisk/freesurfer/bin/mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz nIters 1 $Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $ Linux neuron1 3.3.8-gcg-201303011431 #1 SMP Fri Mar 1 14:34:57 PST 2013 x86_64 x86_64 x86_64 GNU/Linux Wed Sep 4 14:45:46 UTC 2013 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@minerva(x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37 tmpdir is ./tmp.mri_nu_correct.mni.28384 /libdisk/tmp_EMM/subj/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.28384/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.28384/nu0.mnc -odt float $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from orig.mgz... TR=10.02, TE=4.56, TI=600.00, flip angle=12.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.28384/nu0.mnc...
-------------------------------------------------------- Iteration 1 Wed Sep 4 14:45:49 UTC 2013 nu_correct -clobber ./tmp.mri_nu_correct.mni.28384/nu0.mnc ./tmp.mri_nu_correct.mni.28384/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.28384/0/ -iterations 1000 -distance 50 [Elena@neuron1:/libdisk/tmp_EMM/subj/mri/] [2013-09-04 14:45:49] running: /libdisk/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.28384/0/ ./tmp.mri_nu_correct.mni.28384/nu0.mnc ./tmp.mri_nu_correct.mni.28384/nu1.imp
Use of ?PATTERN? without explicit operator is deprecated at /libdisk/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done nu_estimate_np_and_em: crashed while running spline_smooth (termination status=11) nu_correct: crashed while running nu_estimate_np_and_em (termination status=65280)
Does anyone have any idea how I can fix this? Thanks in advance
Regards,
Elena
freesurfer@nmr.mgh.harvard.edu