recon-all \ -sd <directory you want to put all your subjects in> \ -s <unique identifier for the subject you are processing> \ -i < path to *one* file in a T1-weighted dicom series or nifti file> \ -all

cheers Bruce

On Wed, 4 Sep 2013, swathy p.s wrote:

once freesurfer is installed ,how do i run  it every time?