Uuummm could it be possible that you’re using the quantification script from a dev version that is more recent than the one you used to analyze the data? In that case, the script would expect v21 instead of v20, which would explain the problem. Cheers, /E

Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Deng, Yushan Wisteria" YWDENG@mgh.harvard.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, 10 January 2020 at 19:36 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Amygdala Segmentation T1.v20 Command

Hi Eugenio,

Please see attached for the list of files. Thank you so much for your kind help!

Best, Wisteria

Date: Wed, 8 Jan 2020 08:12:04 +0000 From: "Iglesias Gonzalez, Juan E." JIGLESIASGONZALEZ@mgh.harvard.edu Subject: Re: [Freesurfer] Amygdala Segmentation T1.v20 Command To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: 4B81084F-8361-40FA-851E-D30180DC8D23@mgh.harvard.edu Content-Type: text/plain; charset="utf-8"

Thanks, Wisteria. Can you please send us the list of files under the mri directory of any subject? Cheers, /Eugenio

Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com