hi
i used the following commands to create a group subjects: func2tal-sess -res 4 -analysis rk_enc2_sm5 -sf sessid -df sesspar
isxavg-fe-sess -analysis rk_enc2_sm5 -sf sessid -df sesspar -group Y15ENC2_sm5_grp -space tal
stxgrinder-sess -analysis rk_enc2_sm5 -all -space tal -s Y15ENC2_sm5_grp
i use this command to view the results:
tkmedit-sess -analysis rk_enc2_sm5 -map sig -s Y15ENC2_sm5_grp -space tal -isxavg fixed -c omnibus
the output is: -------------------------------------------------------------- tkmedit-sess logfile is /autofs/space/engram_012/users/pman/rk_fmri/code/log/tkmedit-sess.log -------------------------------------------------------------- setenv SUBJECTS_DIR /space/engram/12/users/pman/rk_fmri/STRUCTS INFO: Found session in: ./Y15ENC2_sm5_grp INFO: Y15ENC2_sm5_grp is a group average INFO: Found session in: ./Y15ENC2_sm5_grp INFO: Y15ENC2_sm5_grp is a group average INFO: subject is talairach INFO: subject is talairach INFO: Anatomical directory set to /autofs/space/sake_003/users/inverse/anat_data/talairach/mri/orig ------------------------ SUBJECTS_DIR /space/engram/12/users/pman/rk_fmri/STRUCTS /autofs/space/engram_012/users/pman/rk_fmri/code tkmedit talairach orig -overlay /autofs/space/engram_012/users/pman/rk_fmri/code/Y15ENC2_sm5_grp/bold/rk_enc2_sm5/tal-ffx/omnibus/fsig_000.bfloat -overlay-reg /autofs/space/engram_012/users/pman/rk_fmri/code/Y15ENC2_sm5_grp/bold/rk_enc2_sm5/tal-ffx/register.dat -fthresh 2 -fmid 5 -fslope 1 -aux brain ------------------------ Reading 7 control points... Reading /usr/local/freesurfer/stable/lib/tcl/tkm_common.tcl Reading /usr/local/freesurfer/stable/lib/
the figure looks fine, but, i would like to be able to see the functional maps on an average-subject hi-res structural map. can you please tell me how to do this?
i am using "nmrenv" on engram.nmr.mgh.
thanks a lot, paymon
Do you mean that you have an average subject that you want to use or that you need to make one? The talairach brain is an average.
doug
On Wed, 7 Jun 2006, Paymon Hosseini wrote:
hi
i used the following commands to create a group subjects: func2tal-sess -res 4 -analysis rk_enc2_sm5 -sf sessid -df sesspar
isxavg-fe-sess -analysis rk_enc2_sm5 -sf sessid -df sesspar -group Y15ENC2_sm5_grp -space tal
stxgrinder-sess -analysis rk_enc2_sm5 -all -space tal -s Y15ENC2_sm5_grp
i use this command to view the results:
tkmedit-sess -analysis rk_enc2_sm5 -map sig -s Y15ENC2_sm5_grp -space tal -isxavg fixed -c omnibus
the output is:
tkmedit-sess logfile is /autofs/space/engram_012/users/pman/rk_fmri/code/log/tkmedit-sess.log
setenv SUBJECTS_DIR /space/engram/12/users/pman/rk_fmri/STRUCTS INFO: Found session in: ./Y15ENC2_sm5_grp INFO: Y15ENC2_sm5_grp is a group average INFO: Found session in: ./Y15ENC2_sm5_grp INFO: Y15ENC2_sm5_grp is a group average INFO: subject is talairach INFO: subject is talairach INFO: Anatomical directory set to /autofs/space/sake_003/users/inverse/anat_data/talairach/mri/orig
SUBJECTS_DIR /space/engram/12/users/pman/rk_fmri/STRUCTS /autofs/space/engram_012/users/pman/rk_fmri/code tkmedit talairach orig -overlay /autofs/space/engram_012/users/pman/rk_fmri/code/Y15ENC2_sm5_grp/bold/rk_enc2_sm5/tal-ffx/omnibus/fsig_000.bfloat -overlay-reg /autofs/space/engram_012/users/pman/rk_fmri/code/Y15ENC2_sm5_grp/bold/rk_enc2_sm5/tal-ffx/register.dat
-fthresh 2 -fmid 5 -fslope 1 -aux brain
Reading 7 control points... Reading /usr/local/freesurfer/stable/lib/tcl/tkm_common.tcl Reading /usr/local/freesurfer/stable/lib/
the figure looks fine, but, i would like to be able to see the functional maps on an average-subject hi-res structural map. can you please tell me how to do this?
i am using "nmrenv" on engram.nmr.mgh.
thanks a lot, paymon _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Doug Greve -
Paymon Hosseini