hi
i used the following commands to create a group subjects: func2tal-sess -res 4 -analysis rk_enc2_sm5 -sf sessid -df sesspar
isxavg-fe-sess -analysis rk_enc2_sm5 -sf sessid -df sesspar -group Y15ENC2_sm5_grp -space tal
stxgrinder-sess -analysis rk_enc2_sm5 -all -space tal -s Y15ENC2_sm5_grp
i use this command to view the results:
tkmedit-sess -analysis rk_enc2_sm5 -map sig -s Y15ENC2_sm5_grp -space tal -isxavg fixed -c omnibus
the output is: -------------------------------------------------------------- tkmedit-sess logfile is /autofs/space/engram_012/users/pman/rk_fmri/code/log/tkmedit-sess.log -------------------------------------------------------------- setenv SUBJECTS_DIR /space/engram/12/users/pman/rk_fmri/STRUCTS INFO: Found session in: ./Y15ENC2_sm5_grp INFO: Y15ENC2_sm5_grp is a group average INFO: Found session in: ./Y15ENC2_sm5_grp INFO: Y15ENC2_sm5_grp is a group average INFO: subject is talairach INFO: subject is talairach INFO: Anatomical directory set to /autofs/space/sake_003/users/inverse/anat_data/talairach/mri/orig ------------------------ SUBJECTS_DIR /space/engram/12/users/pman/rk_fmri/STRUCTS /autofs/space/engram_012/users/pman/rk_fmri/code tkmedit talairach orig -overlay /autofs/space/engram_012/users/pman/rk_fmri/code/Y15ENC2_sm5_grp/bold/rk_enc2_sm5/tal-ffx/omnibus/fsig_000.bfloat -overlay-reg /autofs/space/engram_012/users/pman/rk_fmri/code/Y15ENC2_sm5_grp/bold/rk_enc2_sm5/tal-ffx/register.dat -fthresh 2 -fmid 5 -fslope 1 -aux brain ------------------------ Reading 7 control points... Reading /usr/local/freesurfer/stable/lib/tcl/tkm_common.tcl Reading /usr/local/freesurfer/stable/lib/
the figure looks fine, but, i would like to be able to see the functional maps on an average-subject hi-res structural map. can you please tell me how to do this?
i am using "nmrenv" on engram.nmr.mgh.
thanks a lot, paymon