import dicom files with # in name and when to run talairach_avi --i nu.mgz --xfm transforms/talairach.xfm
Hi,
I have two questions about Freesurfer. How can I import dicom files, which include "#" as part of the files names into freesurfer witouth renaming the files? Recon-all -i seem to cut the files name after "#" so that image#1.dcm becomes image. Would you recommend me to run this command for all my processed subjects? As stated in the relase notes? Can I use QA_tools to measure the quality of the recons? cd subjid/mri talairach_avi --i nu.mgz --xfm transforms/talairach.xfm recon-all -s subjid -segstats
Hi Knut
sorry, I don't think you can. We interpret stuff after the # as a frame number.
Bruce On Tue, 9 Oct 2012, Knut J Bjuland wrote:
Hi,
I have two questions about Freesurfer. How can I import dicom files, which include "#" as part of the files names into freesurfer witouth renaming the files? Recon-all -i seem to cut the files name after "#" so that image#1.dcm becomes image. Would you recommend me to run this command for all my processed subjects? As stated in the relase notes? Can I use QA_tools to measure the quality of the recons? cd subjid/mri talairach_avi --i nu.mgz --xfm transforms/talairach.xfm recon-all -s subjid -segstats _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Knut J Bjuland