thanks, I'll try though I have already reinstalled FSL now I have FSL 5.0.1- should that fine prevent FS from starting up anyway? Cheers

On Tue, Oct 9, 2012 at 9:06 AM, Knut J Bjuland knutjbj@hotmail.com wrote:

Hi

You should reinstall FSL 5.0 since it is missing a file.

Knut J

On 10/08/2012 08:05 PM, David Soto wrote:

Hi, just trying to install Fresufer in Ubuntu OneiricOcelot 11.10,

I followed the installation steps in your web and seemed fine

in one of the last steps I did

wmen-dsoto3:/> source $FREESURFER_HOME/SetUpFreeSurfer.csh -------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer FSFAST_HOME /usr/local/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer/subjects MNI_DIR /usr/local/freesurfer/mni /usr/share/fsl/5.0/etc/fslconf/fslmachtype.sh: Command not found. FSL_DIR /usr/share/fsl/5.0

the thing is that when I test the install by typing

tkmedit

it says command not found & cannot get Freesurfer to start

can you help please?

Thanks!

David http://www1.imperial.ac.uk/medicine/people/d.soto/

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