Can you send the full terminal output? Do all subjects have the same paradigm files?

On 12/21/2020 5:24 AM, Nina Khatibi wrote:

External Email - Use Caution

No, I have checked them all.

On Thu, Dec 17, 2020 at 6:05 PM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu> wrote: Are there presentations that are simultaneous?

On 12/12/2020 3:19 AM, Nina Khatibi wrote:

External Email - Use Caution

Hi, I'm using a functional analyse with selxavg3-sess, i have 25 subjects and each subject contains 15 runs, I've done plenty of analyses with different paradigm files, but now with a paradigm file of 5 conditions, I face an error on subject 22 run 12, which I can not solve.I wonder if you can help me. I'm using macbook pro 2018, macOS Mojave 10.14.6 and freesurfer-darwin-macOS-7.1.1-20200811-8b40551

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr012

Excluding 4 points

ERROR: fast_st2fir: two or more presentations are simultaneous

ERROR: creating FIR design matrix for Condition01

Dot indexing is not supported for variables of this type.

Error in flac_customize (line 354)

if(~isempty(flacnew.TFmtx))

Error in fast_selxavg3b (line 179)

flac = flac_customize(flac);

...

---

ERROR: fast_selxavg3() failed\n

Regards,

Nina

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Can you send the par file for run 012?

On 12/28/2020 9:24 AM, Nina Khatibi wrote:

External Email - Use Caution

Sure. Yes, all subjects have a paradigm file generated by matlab. It's full terminal output for "selxavg3-sess -sf /Volumes/ADATA/FunctionalData/SubjectsList -analysis fsaverage5Con2Sec.lh -run-wise " for subject22

Surface data fsaverage lh

--------------------------------------------------------------

selxavg3-sess logfile is /Volumes/ADATA/FunctionalData/log/selxavg3-sess-bold-fsaverage5Con2Sec.lh-201228173226.log

--------------------------------------------------------------

selxavg3-sess log file

/Applications/freesurfer/7.1.1/fsfast/bin/selxavg3-sess

-sf /Volumes/ADATA/FunctionalData/SubjectsList -analysis fsaverage5Con2Sec.lh -run-wise

FreeSurferEnv.csh 7.1.1

uid=501(ninakhatibi) gid=20(staff) groups=20(staff),12(everyone),61(localaccounts),79(_appserverusr),80(admin),81(_appserveradm),98(_lpadmin),701(com.apple.sharepoint.group.1),33(_appstore),100(_lpoperator),204(_developer),250(_analyticsusers),395(com.apple.access_ftp),398(com.apple.access_screensharing),399(com.apple.access_ssh)

/Volumes/ADATA/FunctionalData

Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64

Mon Dec 28 17:32:29 +0330 2020

preproc-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -a fsaverage5Con2Sec.lh -nolog

--------------------------------------------------------------

preproc-sess logfile is /dev/null

--------------------------------------------------------------

FreeSurferEnv.csh 7.1.1

ninakhatibi

setenv FREESURFER_HOME /Applications/freesurfer/7.1.1

setenv SUBJECTS_DIR /Users/ninakhatibi/Desktop/Project/Recon

Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64

/Volumes/ADATA/FunctionalData

/Applications/freesurfer/7.1.1/fsfast/bin/preproc-sess

-s Subject22 -d /Volumes/ADATA/FunctionalData -a fsaverage5Con2Sec.lh -nolog

Mon Dec 28 17:32:31 +0330 2020

instem f

mc 1 f fmcpr

stc 0 fmcpr

sm 0

mask 1 brain

Subject22 Template -----------------------------

mktemplate-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -funcstem f -nolog -update

Session: /Volumes/ADATA/FunctionalData/Subject22 ----------------

Mon Dec 28 17:32:31 +0330 2020

Detected input format at nii

Subject22 Update not needed

Run: 003 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 003 Update not needed

Run: 004 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 004 Update not needed

Run: 005 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 005 Update not needed

Run: 006 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 006 Update not needed

Run: 007 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 007 Update not needed

Run: 008 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 008 Update not needed

Run: 009 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 009 Update not needed

Run: 010 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 010 Update not needed

Run: 011 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 011 Update not needed

Run: 012 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 012 Update not needed

Run: 013 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 013 Update not needed

Run: 014 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 014 Update not needed

Run: 015 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 015 Update not needed

Run: 016 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 016 Update not needed

Run: 017 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 017 Update not needed

Mon Dec 28 17:32:33 +0330 2020

mktemplate-sess completed

Subject22 Registration -----------------------------

register-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -delete-dat -dof 6 -bold -per-run -nolog -update -init-coreg

--------------------------------------------------------------

register-sess logfile is /dev/null

--------------------------------------------------------------

Mon Dec 28 17:32:33 +0330 2020

setenv SUBJECTS_DIR /Users/ninakhatibi/Desktop/Project/Recon

cd /Volumes/ADATA/FunctionalData

/Applications/freesurfer/7.1.1/fsfast/bin/register-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -delete-dat -dof 6 -bold -per-run -nolog -update -init-coreg

freesurfer-darwin-macOS-7.1.1-20200811-8b40551

Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64

Session: /Volumes/ADATA/FunctionalData/Subject22 ----------------

Mon Dec 28 17:32:33 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22

Run: 003 ----------------

Mon Dec 28 17:32:33 +0330 2020

Update not needed

Run: 004 ----------------

Mon Dec 28 17:32:33 +0330 2020

Update not needed

Run: 005 ----------------

Mon Dec 28 17:32:33 +0330 2020

Update not needed

Run: 006 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 007 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 008 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 009 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 010 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 011 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 012 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 013 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 014 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 015 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 016 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 017 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Mon Dec 28 17:32:34 +0330 2020

register-sess completed

Subject22 Mask ------------------------

mkbrainmask-sess -maskstem brain -fsd bold -s Subject22 -d /Volumes/ADATA/FunctionalData -per-run -nolog -update

------------------------------------------------

/Volumes/ADATA/FunctionalData/Subject22

Mon Dec 28 17:32:34 +0330 2020

Subject22 Update not needed for session-level mask

Subject22 Update not needed for run 003 mask

Subject22 Update not needed for run 004 mask

Subject22 Update not needed for run 005 mask

Subject22 Update not needed for run 006 mask

Subject22 Update not needed for run 007 mask

Subject22 Update not needed for run 008 mask

Subject22 Update not needed for run 009 mask

Subject22 Update not needed for run 010 mask

Subject22 Update not needed for run 011 mask

Subject22 Update not needed for run 012 mask

Subject22 Update not needed for run 013 mask

Subject22 Update not needed for run 014 mask

Subject22 Update not needed for run 015 mask

Subject22 Update not needed for run 016 mask

Subject22 Update not needed for run 017 mask

Subject22 Update not needed for run 003 meanval

Subject22 Update not needed for run 004 meanval

Subject22 Update not needed for run 005 meanval

Subject22 Update not needed for run 006 meanval

Subject22 Update not needed for run 007 meanval

Subject22 Update not needed for run 008 meanval

Subject22 Update not needed for run 009 meanval

Subject22 Update not needed for run 010 meanval

Subject22 Update not needed for run 011 meanval

Subject22 Update not needed for run 012 meanval

Subject22 Update not needed for run 013 meanval

Subject22 Update not needed for run 014 meanval

Subject22 Update not needed for run 015 meanval

Subject22 Update not needed for run 016 meanval

Subject22 Update not needed for run 017 meanval

Mon Dec 28 17:32:36 +0330 2020

mkbrainmask-sess done

Subject22 MC -----------------------------

mc-sess -fstem f -fmcstem fmcpr -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -per-run -nolog -update

Logfile is /dev/null

-------------------------------------------

/Volumes/ADATA/FunctionalData/Subject22

RunList: 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017

Subject22 003 Update not needed

Subject22 004 Update not needed

Subject22 005 Update not needed

Subject22 006 Update not needed

Subject22 007 Update not needed

Subject22 008 Update not needed

Subject22 009 Update not needed

Subject22 010 Update not needed

Subject22 011 Update not needed

Subject22 012 Update not needed

Subject22 013 Update not needed

Subject22 014 Update not needed

Subject22 015 Update not needed

Subject22 016 Update not needed

Subject22 017 Update not needed

Mon Dec 28 17:32:37 +0330 2020

mc-sess completed SUCCESSFULLY

Subject22 To Surface -----------------------------

rawfunc2surf-sess -fwhm 5 -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -hemi lh -trgsubject fsaverage -nolog -update -per-run

instem fmcpr

outstem fmcpr.sm5.fsaverage.hemi

------------------------------

1/1 Subject22

1/1 Subject22 003 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/003/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 004 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/004/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 005 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/005/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 006 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/006/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 007 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/007/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 008 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/008/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 009 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/009/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 010 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/010/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 011 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/011/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 012 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/012/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 013 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/013/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 014 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/014/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 015 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/015/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 016 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/016/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 017 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/017/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

/Volumes/ADATA/FunctionalData/Subject22/bold/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 003 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 003 Update not needed

1/1 Subject22 004 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 004 Update not needed

1/1 Subject22 005 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 005 Update not needed

1/1 Subject22 006 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 006 Update not needed

1/1 Subject22 007 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 007 Update not needed

1/1 Subject22 008 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 008 Update not needed

1/1 Subject22 009 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 009 Update not needed

1/1 Subject22 010 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 010 Update not needed

1/1 Subject22 011 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 011 Update not needed

1/1 Subject22 012 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 012 Update not needed

1/1 Subject22 013 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 013 Update not needed

1/1 Subject22 014 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 014 Update not needed

1/1 Subject22 015 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 015 Update not needed

1/1 Subject22 016 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 016 Update not needed

1/1 Subject22 017 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 017 Update not needed

Mon Dec 28 17:32:39 +0330 2020

rawfunc2surf-sess completed

----------------------------------------

Started at Mon Dec 28 17:32:31 +0330 2020

Ended at Mon Dec 28 17:32:39 +0330 2020

preproc-sess done

-------------------------------------------

1/1 /Volumes/ADATA/FunctionalData/Subject22

Mon Dec 28 17:32:40 +0330 2020

anadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh

DoGLMFit = 1

DoContrasts = 1

UpdateNeeded = 1

Subject22 Update needed

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/sxa3.config.txt

MLF is /tmp/selxavg3-sess-12836.m

------------------------------------------

% Mon Dec 28 17:32:39 +0330 2020

% /Volumes/ADATA/FunctionalData

% fsaverage5Con2Sec.lh

which fast_selxavg3

which fast_ldanaflac

which MRIread

fast_selxavg3b('/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/sxa3.config.txt')

if(~fast_fileexists('/tmp/selxavg3-sess-12836.ok')); quit; end

%--------------------------------

quit;

------------------------------------------

------------------------------------------

------- matlab output --------------------

< M A T L A B (R) >

Copyright 1984-2019 The MathWorks, Inc.

R2019b (9.7.0.1190202) 64-bit (maci64)

August 21, 2019

To get started, type doc.

For product information, visit MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be www.mathworks.comhttp://secure-web.cisco.com/1STxfBY3WGFvD3gXXkN4m2TGN9E2-ey5ooWk-I0oykgFvg0S6cGqE7hUJ_YvLX-QZysSf-Fc6OhVqyl76vmExO_dYNKJEjDfCnV9oGoCy_Ct17kgOIvi_v80tqJwKlT0tDj-SLsn9b6gv1Z4gb469cTVGMiG51rI9lIZXAvpwQ6CdxLWh57GXmXYsaYDWW4A-LWN6WHsNuDpiL-6uIJ_O7RQLE9ECeqawGb92oSV0cij2tXiNbwUy9UJVI4iY1oHYol9w1IdK9zsU7f_lvE5IgQ/http%3A%2F%2Fwww.mathworks.com.

...

...

...

...

...

>> /Applications/freesurfer/7.1.1/fsfast/toolbox/fast_selxavg3.m

...

/Applications/freesurfer/7.1.1/fsfast/toolbox/fast_ldanaflac.m

...

/Applications/freesurfer/7.1.1/matlab/MRIread.m

...

...

...

...

...

starting fast_selxavg3b

#@# Subject22 ###############################

/Volumes/ADATA/FunctionalData/Subject22

-------------------------

fast_selxavg3b.m 7.1.1

-------------------------

outtop = /Volumes/ADATA/FunctionalData

Extension format = nii.gz

INFO: key nSliceGroups unrecognized, line 11, skipping

1 EastDirection.mat

2 NorthDirection.mat

3 NorthSouth.mat

4 SouthDirection.mat

5 WestDirection.mat

6 WestEast.mat

Excluding 4 points

nruns = 15

autostimdur =

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.002 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/Xtmp.mat

XCond = 65.9772 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.490734 (t=0.00982513)

2 -0.25 -0.271862 (t=0.0107347)

3 0 -0.0630477 (t=0.0121373)

4 0.25 0.131482 (t=0.0128401)

5 0.5 0.30087 (t=0.0164747)

AR1 Correction M: 0.0987533 1.25547

Computing contrast matrices

OLS Beta Pass

run 1 t= 0.0

reading data ... 0.57665

Global Mean 667.87

Global In-Mask Mean = 667.874 (850.594)

Rescale Target = 100

RescaleFactor = 0.149729

OLS Residual Pass

run 1 t= 0.0

reading data ... 0.576758

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 7166 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.0013297 sec

seg 1 4999 nrho1 = 0.409

seg 2 4999 nrho1 = 0.473

seg 3 4999 nrho1 = 0.515

seg 4 4999 nrho1 = 0.550

seg 5 4999 nrho1 = 0.581

seg 6 4999 nrho1 = 0.604

seg 7 4999 nrho1 = 0.621

seg 8 4999 nrho1 = 0.634

seg 9 4999 nrho1 = 0.644

seg 10 4999 nrho1 = 0.656

seg 11 4999 nrho1 = 0.668

seg 12 4999 nrho1 = 0.680

seg 13 4999 nrho1 = 0.692

seg 14 4999 nrho1 = 0.704

seg 15 4999 nrho1 = 0.715

seg 16 4999 nrho1 = 0.725

seg 17 4999 nrho1 = 0.736

seg 18 4999 nrho1 = 0.746

seg 19 4999 nrho1 = 0.756

seg 20 4999 nrho1 = 0.766

seg 21 4999 nrho1 = 0.777

seg 22 4999 nrho1 = 0.790

seg 23 4999 nrho1 = 0.804

seg 24 4999 nrho1 = 0.816

seg 25 4999 nrho1 = 0.828

seg 26 4999 nrho1 = 0.841

seg 27 4999 nrho1 = 0.858

seg 28 4999 nrho1 = 0.875

seg 29 4999 nrho1 = 0.936

seg 30 4984 nrho1 = 0.996

GLS Beta Pass

run 1 t= 0.0

GLS Residual Pass

run 1 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/EastDirection exists, deleting

Saving efficiency 8.41876

Testing Motion Correction Parameters

0.28 0.31 -0.01 0.24 1.14 0.38 -0.26 -0.37 -0.22 0.04 -0.14 -0.47 0.71 -0.14 -0.27 -0.37 0.26 0.37

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/NorthDirection exists, deleting

Saving efficiency 6.95623

Testing Motion Correction Parameters

0.10 0.64 0.80 0.71 -0.21 0.59 -0.06 -0.09 0.16 0.39 0.43 -0.48 -1.33 -0.74 -0.06 -0.09 0.06 0.10

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/NorthSouth exists, deleting

Saving efficiency 4.58659

Testing Motion Correction Parameters

-0.26 0.15 0.41 0.19 -0.15 0.06 -0.18 -0.35 0.29 0.36 0.46 -0.07 -0.69 -0.28 -0.18 -0.35 0.18 0.36

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/SouthDirection exists, deleting

Saving efficiency 7.74553

Testing Motion Correction Parameters

0.71 0.27 -0.00 0.26 0.04 0.46 0.25 0.54 -0.33 -0.19 -0.32 -0.31 0.03 -0.12 0.25 0.53 -0.26 -0.55

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/WestDirection exists, deleting

Saving efficiency 9.01186

Testing Motion Correction Parameters

-1.70 -2.18 -0.92 -2.10 -0.80 -2.67 0.07 -0.01 0.42 -0.24 0.04 2.29 0.39 1.57 0.07 -0.01 -0.06 0.02

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/WestEast exists, deleting

Saving efficiency 5.89895

Testing Motion Correction Parameters

-1.16 -1.43 -0.45 -1.32 -1.32 -1.76 0.21 0.20 0.40 -0.17 0.12 1.67 -0.12 0.94 0.21 0.20 -0.20 -0.20

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.001 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/Xtmp.mat

XCond = 95.1683 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.482498 (t=0.00109856)

2 -0.25 -0.268426 (t=0.00193983)

3 0 -0.0620188 (t=0.00228293)

4 0.25 0.130658 (t=0.00255922)

5 0.5 0.29742 (t=0.00282913)

AR1 Correction M: 0.0980109 1.27332

Computing contrast matrices

OLS Beta Pass

run 2 t= 0.0

reading data ... 0.52949

Global Mean 670.01

Global In-Mask Mean = 670.015 (867.091)

Rescale Target = 100

RescaleFactor = 0.14925

OLS Residual Pass

run 2 t= 0.0

reading data ... 0.545993

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00130471 sec

seg 1 4999 nrho1 = 0.114

seg 2 4999 nrho1 = 0.173

seg 3 4999 nrho1 = 0.203

seg 4 4999 nrho1 = 0.220

seg 5 4999 nrho1 = 0.231

seg 6 4999 nrho1 = 0.239

seg 7 4999 nrho1 = 0.245

seg 8 4999 nrho1 = 0.251

seg 9 4999 nrho1 = 0.257

seg 10 4999 nrho1 = 0.262

seg 11 4999 nrho1 = 0.267

seg 12 4999 nrho1 = 0.272

seg 13 4999 nrho1 = 0.276

seg 14 4999 nrho1 = 0.281

seg 15 4999 nrho1 = 0.284

seg 16 4999 nrho1 = 0.288

seg 17 4999 nrho1 = 0.292

seg 18 4999 nrho1 = 0.295

seg 19 4999 nrho1 = 0.299

seg 20 4999 nrho1 = 0.303

seg 21 4999 nrho1 = 0.307

seg 22 4999 nrho1 = 0.311

seg 23 4999 nrho1 = 0.316

seg 24 4999 nrho1 = 0.320

seg 25 4999 nrho1 = 0.325

seg 26 4999 nrho1 = 0.330

seg 27 4999 nrho1 = 0.336

seg 28 4999 nrho1 = 0.343

seg 29 4999 nrho1 = 0.356

seg 30 4984 nrho1 = 0.386

GLS Beta Pass

run 2 t= 0.0

GLS Residual Pass

run 2 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/EastDirection exists, deleting

Saving efficiency 8.20003

Testing Motion Correction Parameters

-0.41 -1.27 -1.18 1.30 -0.33 1.28 -0.13 -0.33 0.67 -0.71 0.09 1.28 0.32 0.28 -0.13 -0.33 0.14 0.35

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/NorthDirection exists, deleting

Saving efficiency 9.04583

Testing Motion Correction Parameters

0.19 -0.58 -0.53 0.61 -0.09 0.64 -0.06 -0.01 0.12 -0.96 -0.45 0.59 0.23 0.45 -0.05 -0.01 0.06 0.01

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/NorthSouth exists, deleting

Saving efficiency 6.25977

Testing Motion Correction Parameters

0.31 -2.21 -2.07 2.33 -0.20 2.44 -0.34 -0.29 0.10 -3.33 -1.14 2.25 0.83 1.47 -0.34 -0.30 0.35 0.30

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/SouthDirection exists, deleting

Saving efficiency 9.31318

Testing Motion Correction Parameters

-0.28 3.04 2.85 -3.18 0.24 -3.33 0.53 0.53 -0.04 4.30 1.32 -3.08 -1.13 -1.92 0.53 0.54 -0.54 -0.53

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/WestDirection exists, deleting

Saving efficiency 8.41973

Testing Motion Correction Parameters

0.52 -0.07 -0.08 0.07 0.18 0.11 -0.22 -0.09 -0.83 -0.59 -0.66 0.07 0.20 0.42 -0.22 -0.09 0.21 0.08

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/WestEast exists, deleting

Saving efficiency 5.39385

Testing Motion Correction Parameters

0.60 0.54 0.50 -0.55 0.32 -0.51 -0.04 0.12 -0.98 0.04 -0.42 -0.55 -0.05 0.05 -0.04 0.12 0.03 -0.13

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.001 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/Xtmp.mat

XCond = 165.337 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.479228 (t=0.0020821)

2 -0.25 -0.263675 (t=0.00249911)

3 0 -0.0551031 (t=0.00277528)

4 0.25 0.141897 (t=0.00304782)

5 0.5 0.317421 (t=0.00331738)

AR1 Correction M: 0.0845885 1.24876

Computing contrast matrices

OLS Beta Pass

run 3 t= 0.0

reading data ... 0.510008

Global Mean 677.59

Global In-Mask Mean = 677.591 (883.711)

Rescale Target = 100

RescaleFactor = 0.147582

OLS Residual Pass

run 3 t= 0.0

reading data ... 0.521663

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00119298 sec

seg 1 4999 nrho1 = 0.108

seg 2 4999 nrho1 = 0.128

seg 3 4999 nrho1 = 0.140

seg 4 4999 nrho1 = 0.151

seg 5 4999 nrho1 = 0.159

seg 6 4999 nrho1 = 0.165

seg 7 4999 nrho1 = 0.172

seg 8 4999 nrho1 = 0.177

seg 9 4999 nrho1 = 0.181

seg 10 4999 nrho1 = 0.186

seg 11 4999 nrho1 = 0.192

seg 12 4999 nrho1 = 0.196

seg 13 4999 nrho1 = 0.201

seg 14 4999 nrho1 = 0.205

seg 15 4999 nrho1 = 0.208

seg 16 4999 nrho1 = 0.212

seg 17 4999 nrho1 = 0.215

seg 18 4999 nrho1 = 0.219

seg 19 4999 nrho1 = 0.222

seg 20 4999 nrho1 = 0.225

seg 21 4999 nrho1 = 0.228

seg 22 4999 nrho1 = 0.231

seg 23 4999 nrho1 = 0.234

seg 24 4999 nrho1 = 0.238

seg 25 4999 nrho1 = 0.243

seg 26 4999 nrho1 = 0.247

seg 27 4999 nrho1 = 0.252

seg 28 4999 nrho1 = 0.258

seg 29 4999 nrho1 = 0.268

seg 30 4984 nrho1 = 0.286

GLS Beta Pass

run 3 t= 0.0

GLS Residual Pass

run 3 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/EastDirection exists, deleting

Saving efficiency 8.31283

Testing Motion Correction Parameters

1.27 1.46 -0.08 0.81 0.18 -0.74 0.04 -0.03 0.80 -0.78 -1.47 -0.05 0.19 -0.79 0.04 -0.03 -0.04 0.04

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/NorthDirection exists, deleting

Saving efficiency 7.55563

Testing Motion Correction Parameters

-0.61 -0.56 -0.04 -0.48 0.03 0.44 -0.11 -0.05 -0.38 0.43 0.53 -0.05 0.06 0.46 -0.11 -0.05 0.10 0.05

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/NorthSouth exists, deleting

Saving efficiency 4.41766

Testing Motion Correction Parameters

-0.03 0.11 -0.17 -0.09 0.05 0.09 0.09 0.13 -0.05 0.08 -0.12 -0.16 0.23 0.09 0.09 0.13 -0.09 -0.13

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/SouthDirection exists, deleting

Saving efficiency 6.32341

Testing Motion Correction Parameters

-0.45 -0.82 0.24 -0.20 -0.06 0.18 -0.28 -0.29 -0.23 0.20 0.82 0.21 -0.33 0.20 -0.28 -0.29 0.28 0.29

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/WestDirection exists, deleting

Saving efficiency 7.86352

Testing Motion Correction Parameters

0.12 0.29 -0.12 0.05 -0.13 -0.04 0.42 0.47 0.02 -0.04 -0.26 -0.11 0.08 -0.05 0.42 0.47 -0.42 -0.47

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/WestEast exists, deleting

Saving efficiency 5.61933

Testing Motion Correction Parameters

-0.50 -0.44 -0.02 -0.36 -0.20 0.35 0.20 0.29 -0.40 0.36 0.46 -0.04 -0.06 0.36 0.20 0.29 -0.21 -0.30

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.001 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/Xtmp.mat

XCond = 60.7405 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.475928 (t=0.00136245)

2 -0.25 -0.264094 (t=0.00370552)

3 0 -0.0585378 (t=0.004074)

4 0.25 0.133993 (t=0.00442966)

5 0.5 0.301425 (t=0.00478028)

AR1 Correction M: 0.0927915 1.27762

Computing contrast matrices

OLS Beta Pass

run 4 t= 0.0

reading data ... 0.513164

Global Mean 678.87

Global In-Mask Mean = 678.868 (883.905)

Rescale Target = 100

RescaleFactor = 0.147304

OLS Residual Pass

run 4 t= 0.0

reading data ... 0.518631

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00132119 sec

seg 1 4999 nrho1 = 0.109

seg 2 4999 nrho1 = 0.124

seg 3 4999 nrho1 = 0.132

seg 4 4999 nrho1 = 0.136

seg 5 4999 nrho1 = 0.140

seg 6 4999 nrho1 = 0.143

seg 7 4999 nrho1 = 0.146

seg 8 4999 nrho1 = 0.149

seg 9 4999 nrho1 = 0.153

seg 10 4999 nrho1 = 0.155

seg 11 4999 nrho1 = 0.158

seg 12 4999 nrho1 = 0.161

seg 13 4999 nrho1 = 0.164

seg 14 4999 nrho1 = 0.166

seg 15 4999 nrho1 = 0.169

seg 16 4999 nrho1 = 0.172

seg 17 4999 nrho1 = 0.175

seg 18 4999 nrho1 = 0.177

seg 19 4999 nrho1 = 0.180

seg 20 4999 nrho1 = 0.183

seg 21 4999 nrho1 = 0.185

seg 22 4999 nrho1 = 0.188

seg 23 4999 nrho1 = 0.191

seg 24 4999 nrho1 = 0.193

seg 25 4999 nrho1 = 0.197

seg 26 4999 nrho1 = 0.200

seg 27 4999 nrho1 = 0.204

seg 28 4999 nrho1 = 0.209

seg 29 4999 nrho1 = 0.214

seg 30 4984 nrho1 = 0.225

GLS Beta Pass

run 4 t= 0.0

GLS Residual Pass

run 4 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/EastDirection exists, deleting

Saving efficiency 7.0708

Testing Motion Correction Parameters

-2.33 0.08 -0.51 -1.63 -2.43 -2.36 -0.14 -0.14 -0.35 2.32 1.42 -1.74 -0.27 1.29 -0.13 -0.14 0.13 0.14

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/NorthDirection exists, deleting

Saving efficiency 8.47542

Testing Motion Correction Parameters

-1.17 0.62 -0.06 -0.59 -0.53 -1.20 -0.60 -0.45 -2.06 1.20 1.07 -0.69 -0.18 0.42 -0.60 -0.45 0.58 0.43

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/NorthSouth exists, deleting

Saving efficiency 5.23588

Testing Motion Correction Parameters

-3.21 0.33 -0.84 -2.36 -1.90 -2.95 -0.52 -0.37 -2.17 3.23 1.72 -2.58 0.04 1.94 -0.51 -0.37 0.49 0.35

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/SouthDirection exists, deleting

Saving efficiency 7.88643

Testing Motion Correction Parameters

3.93 -0.02 1.58 3.42 2.67 3.41 0.25 0.16 1.27 -3.90 -1.54 3.62 -0.26 -2.96 0.24 0.16 -0.23 -0.15

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/WestDirection exists, deleting

Saving efficiency 8.82303

Testing Motion Correction Parameters

0.42 -0.77 -0.55 -0.06 0.53 0.70 0.47 0.45 0.88 -0.45 -1.10 -0.01 1.11 0.18 0.46 0.45 -0.46 -0.44

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/WestEast exists, deleting

Saving efficiency 4.94523

Testing Motion Correction Parameters

1.64 -0.44 0.01 0.75 1.80 1.92 0.34 0.34 0.74 -1.67 -1.65 0.85 0.78 -0.49 0.34 0.34 -0.34 -0.33

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.005 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/Xtmp.mat

XCond = 124.613 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.486086 (t=0.00162174)

2 -0.25 -0.270277 (t=0.00303463)

3 0 -0.0627359 (t=0.0033982)

4 0.25 0.131466 (t=0.00375891)

5 0.5 0.300554 (t=0.00411693)

AR1 Correction M: 0.0977823 1.26308

Computing contrast matrices

OLS Beta Pass

run 5 t= 0.0

reading data ... 0.520289

Global Mean 676.09

Global In-Mask Mean = 676.093 (877.252)

Rescale Target = 100

RescaleFactor = 0.147909

OLS Residual Pass

run 5 t= 0.0

reading data ... 0.519612

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00187968 sec

seg 1 4999 nrho1 = 0.085

seg 2 4999 nrho1 = 0.105

seg 3 4999 nrho1 = 0.115

seg 4 4999 nrho1 = 0.123

seg 5 4999 nrho1 = 0.130

seg 6 4999 nrho1 = 0.137

seg 7 4999 nrho1 = 0.142

seg 8 4999 nrho1 = 0.146

seg 9 4999 nrho1 = 0.150

seg 10 4999 nrho1 = 0.153

seg 11 4999 nrho1 = 0.157

seg 12 4999 nrho1 = 0.160

seg 13 4999 nrho1 = 0.163

seg 14 4999 nrho1 = 0.165

seg 15 4999 nrho1 = 0.168

seg 16 4999 nrho1 = 0.170

seg 17 4999 nrho1 = 0.173

seg 18 4999 nrho1 = 0.175

seg 19 4999 nrho1 = 0.178

seg 20 4999 nrho1 = 0.181

seg 21 4998 nrho1 = 0.184

seg 22 5000 nrho1 = 0.187

seg 23 4999 nrho1 = 0.189

seg 24 4999 nrho1 = 0.192

seg 25 4999 nrho1 = 0.196

seg 26 4999 nrho1 = 0.200

seg 27 4999 nrho1 = 0.204

seg 28 4999 nrho1 = 0.208

seg 29 4999 nrho1 = 0.212

seg 30 4984 nrho1 = 0.221

GLS Beta Pass

run 5 t= 0.0

GLS Residual Pass

run 5 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/EastDirection exists, deleting

Saving efficiency 8.32033

Testing Motion Correction Parameters

-0.23 1.71 1.63 -1.15 0.51 -0.83 0.71 0.66 -0.01 0.56 1.08 -1.21 -0.60 1.24 0.71 0.67 -0.72 -0.67

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/NorthDirection exists, deleting

Saving efficiency 8.00595

Testing Motion Correction Parameters

-0.23 -0.44 -0.55 0.66 0.65 0.38 0.13 0.27 -0.51 0.15 -0.13 0.64 0.81 -0.78 0.13 0.27 -0.14 -0.29

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/NorthSouth exists, deleting

Saving efficiency 4.89576

Testing Motion Correction Parameters

-0.14 0.52 0.36 -0.27 0.67 -0.28 -0.19 -0.07 -1.09 0.26 0.32 -0.29 0.03 0.24 -0.19 -0.07 0.18 0.06

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/SouthDirection exists, deleting

Saving efficiency 7.34061

Testing Motion Correction Parameters

0.02 -1.94 -1.65 1.51 -0.41 1.15 0.54 0.43 1.22 -0.28 -0.83 1.55 0.67 -1.57 0.54 0.43 -0.52 -0.42

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/WestDirection exists, deleting

Saving efficiency 7.63854

Testing Motion Correction Parameters

0.49 0.66 0.65 -1.02 -0.70 -0.67 -2.05 -2.12 -0.44 -0.35 0.05 -0.99 -0.93 1.14 -2.04 -2.11 2.06 2.12

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/WestEast exists, deleting

Saving efficiency 5.18212

Testing Motion Correction Parameters

0.45 -0.28 -0.26 0.02 -0.78 0.03 -1.76 -1.75 -0.23 -0.57 -0.47 0.03 -0.11 -0.01 -1.75 -1.76 1.77 1.76

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.001 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/Xtmp.mat

XCond = 51.8534 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.476763 (t=0.00135744)

2 -0.25 -0.264159 (t=0.00379904)

3 0 -0.0568164 (t=0.00417289)

4 0.25 0.138914 (t=0.00453842)

5 0.5 0.31205 (t=0.0048956)

AR1 Correction M: 0.0874009 1.2602

Computing contrast matrices

OLS Beta Pass

run 6 t= 0.0

reading data ... 0.525443

Global Mean 675.22

Global In-Mask Mean = 675.219 (879.593)

Rescale Target = 100

RescaleFactor = 0.1481

OLS Residual Pass

run 6 t= 0.0

reading data ... 0.518304

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00163141 sec

seg 1 4999 nrho1 = 0.065

seg 2 4999 nrho1 = 0.079

seg 3 4999 nrho1 = 0.097

seg 4 4999 nrho1 = 0.104

seg 5 4999 nrho1 = 0.109

seg 6 4999 nrho1 = 0.113

seg 7 4999 nrho1 = 0.118

seg 8 4999 nrho1 = 0.122

seg 9 4999 nrho1 = 0.126

seg 10 4999 nrho1 = 0.129

seg 11 4999 nrho1 = 0.132

seg 12 4999 nrho1 = 0.135

seg 13 4999 nrho1 = 0.138

seg 14 4999 nrho1 = 0.141

seg 15 4999 nrho1 = 0.143

seg 16 4999 nrho1 = 0.145

seg 17 4999 nrho1 = 0.147

seg 18 4999 nrho1 = 0.150

seg 19 4999 nrho1 = 0.152

seg 20 4999 nrho1 = 0.154

seg 21 4999 nrho1 = 0.156

seg 22 4999 nrho1 = 0.158

seg 23 4999 nrho1 = 0.160

seg 24 4999 nrho1 = 0.162

seg 25 4999 nrho1 = 0.164

seg 26 4999 nrho1 = 0.166

seg 27 4999 nrho1 = 0.169

seg 28 4999 nrho1 = 0.172

seg 29 4999 nrho1 = 0.176

seg 30 4984 nrho1 = 0.183

GLS Beta Pass

run 6 t= 0.0

GLS Residual Pass

run 6 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/EastDirection exists, deleting

Saving efficiency 8.35905

Testing Motion Correction Parameters

-0.20 0.68 0.46 -0.61 1.27 -0.67 0.32 0.32 -0.15 0.47 0.76 -0.65 -0.11 0.40 0.32 0.32 -0.32 -0.32

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/NorthDirection exists, deleting

Saving efficiency 7.88911

Testing Motion Correction Parameters

5.39 0.46 1.48 -0.63 1.58 -2.64 0.81 0.76 0.58 -4.78 -0.37 -0.53 -0.75 -0.47 0.80 0.77 -0.80 -0.75

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/NorthSouth exists, deleting

Saving efficiency 5.12416

Testing Motion Correction Parameters

3.95 2.59 3.69 -2.79 2.10 -4.95 1.82 1.69 0.70 -2.27 0.98 -2.68 -2.25 0.65 1.82 1.69 -1.81 -1.67

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/SouthDirection exists, deleting

Saving efficiency 7.5691

Testing Motion Correction Parameters

-1.07 -4.06 -4.12 4.05 -1.49 4.61 -1.98 -1.82 -0.50 0.07 -3.06 4.06 2.81 -2.36 -1.98 -1.82 1.97 1.81

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/WestDirection exists, deleting

Saving efficiency 8.57407

Testing Motion Correction Parameters

-2.13 1.40 0.61 -1.24 -1.33 -0.07 0.24 0.20 0.11 3.21 2.60 -1.33 -1.09 2.80 0.25 0.20 -0.24 -0.19

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/WestEast exists, deleting

Saving efficiency 5.89219

Testing Motion Correction Parameters

-0.78 0.21 0.05 -0.19 -1.83 0.30 -0.03 -0.06 0.17 0.94 0.54 -0.20 -0.44 0.85 -0.03 -0.06 0.04 0.06

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.000 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/Xtmp.mat

XCond = 101.806 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.477022 (t=0.00238827)

2 -0.25 -0.26476 (t=0.00292959)

3 0 -0.057918 (t=0.00329708)

4 0.25 0.137004 (t=0.00365946)

5 0.5 0.308384 (t=0.00401563)

AR1 Correction M: 0.0896574 1.26523

Computing contrast matrices

OLS Beta Pass

run 7 t= 0.0

reading data ... 0.528405

Global Mean 669.23

Global In-Mask Mean = 669.226 (876.627)

Rescale Target = 100

RescaleFactor = 0.149426

OLS Residual Pass

run 7 t= 0.0

reading data ... 0.542751

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00116701 sec

seg 1 4999 nrho1 = 0.075

seg 2 4999 nrho1 = 0.091

seg 3 4999 nrho1 = 0.100

seg 4 4999 nrho1 = 0.105

seg 5 4999 nrho1 = 0.108

seg 6 4999 nrho1 = 0.112

seg 7 4999 nrho1 = 0.115

seg 8 4999 nrho1 = 0.117

seg 9 4999 nrho1 = 0.119

seg 10 4999 nrho1 = 0.121

seg 11 4999 nrho1 = 0.123

seg 12 4999 nrho1 = 0.125

seg 13 4998 nrho1 = 0.127

seg 14 5000 nrho1 = 0.128

seg 15 4999 nrho1 = 0.130

seg 16 4999 nrho1 = 0.131

seg 17 4999 nrho1 = 0.132

seg 18 4999 nrho1 = 0.134

seg 19 4999 nrho1 = 0.135

seg 20 4999 nrho1 = 0.136

seg 21 4999 nrho1 = 0.138

seg 22 4999 nrho1 = 0.139

seg 23 4999 nrho1 = 0.141

seg 24 4999 nrho1 = 0.143

seg 25 4999 nrho1 = 0.145

seg 26 4999 nrho1 = 0.147

seg 27 4999 nrho1 = 0.149

seg 28 4999 nrho1 = 0.152

seg 29 4999 nrho1 = 0.155

seg 30 4984 nrho1 = 0.163

GLS Beta Pass

run 7 t= 0.0

GLS Residual Pass

run 7 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/EastDirection exists, deleting

Saving efficiency 7.5071

Testing Motion Correction Parameters

-1.36 -2.08 -1.90 1.12 -1.53 -0.31 0.07 0.12 0.22 1.06 -0.39 1.94 1.41 -0.79 0.07 0.12 -0.07 -0.12

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/NorthDirection exists, deleting

Saving efficiency 7.74585

Testing Motion Correction Parameters

0.09 -0.14 -0.39 -0.32 0.76 0.40 -0.01 -0.07 0.16 -0.16 -0.65 0.00 0.59 0.36 -0.01 -0.07 0.01 0.08

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/NorthSouth exists, deleting

Saving efficiency 5.17157

Testing Motion Correction Parameters

-0.72 -1.55 -1.86 0.32 -0.06 0.06 -0.09 -0.19 0.37 0.47 -0.91 1.17 1.86 -0.16 -0.09 -0.19 0.10 0.19

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/SouthDirection exists, deleting

Saving efficiency 7.90149

Testing Motion Correction Parameters

1.74 2.88 2.86 -1.20 1.01 0.26 0.15 0.23 -0.44 -1.30 0.73 -2.53 -2.43 0.80 0.15 0.23 -0.16 -0.24

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/WestDirection exists, deleting

Saving efficiency 9.82655

Testing Motion Correction Parameters

-0.25 -0.08 0.07 0.40 -0.41 -0.40 -0.27 -0.34 -0.02 0.30 0.39 0.18 -0.15 -0.41 -0.27 -0.34 0.27 0.34

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/WestEast exists, deleting

Saving efficiency 5.87919

Testing Motion Correction Parameters

0.51 1.01 1.12 -0.32 0.47 -0.01 -0.20 -0.28 -0.15 -0.35 0.52 -0.82 -0.95 0.18 -0.20 -0.28 0.20 0.28

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.000 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/Xtmp.mat

XCond = 61.9774 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.484824 (t=0.00132304)

2 -0.25 -0.268378 (t=0.00370903)

3 0 -0.0601149 (t=0.0041002)

4 0.25 0.135279 (t=0.00446539)

5 0.5 0.307195 (t=0.00483421)

AR1 Correction M: 0.0931041 1.25531

Computing contrast matrices

OLS Beta Pass

run 8 t= 0.0

reading data ... 0.514232

Global Mean 669.69

Global In-Mask Mean = 669.692 (876.682)

Rescale Target = 100

RescaleFactor = 0.149322

OLS Residual Pass

run 8 t= 0.0

reading data ... 0.519384

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00128195 sec

seg 1 4999 nrho1 = 0.082

seg 2 4999 nrho1 = 0.094

seg 3 4999 nrho1 = 0.100

seg 4 4999 nrho1 = 0.105

seg 5 4999 nrho1 = 0.110

seg 6 4999 nrho1 = 0.113

seg 7 4999 nrho1 = 0.116

seg 8 4999 nrho1 = 0.118

seg 9 4999 nrho1 = 0.120

seg 10 4999 nrho1 = 0.122

seg 11 4999 nrho1 = 0.123

seg 12 4999 nrho1 = 0.125

seg 13 4999 nrho1 = 0.127

seg 14 4999 nrho1 = 0.128

seg 15 4999 nrho1 = 0.130

seg 16 4999 nrho1 = 0.131

seg 17 4999 nrho1 = 0.133

seg 18 4999 nrho1 = 0.134

seg 19 4999 nrho1 = 0.136

seg 20 4999 nrho1 = 0.137

seg 21 4999 nrho1 = 0.140

seg 22 4999 nrho1 = 0.141

seg 23 4999 nrho1 = 0.143

seg 24 4999 nrho1 = 0.145

seg 25 4999 nrho1 = 0.148

seg 26 4999 nrho1 = 0.150

seg 27 4999 nrho1 = 0.153

seg 28 4999 nrho1 = 0.156

seg 29 4999 nrho1 = 0.161

seg 30 4984 nrho1 = 0.168

GLS Beta Pass

run 8 t= 0.0

GLS Residual Pass

run 8 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/EastDirection exists, deleting

Saving efficiency 8.63898

Testing Motion Correction Parameters

0.03 0.56 -0.60 -0.05 -1.54 -0.43 -1.32 -1.28 -0.41 0.10 -0.53 -0.21 0.25 -0.05 -1.31 -1.28 1.31 1.27

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/NorthDirection exists, deleting

Saving efficiency 8.62758

Testing Motion Correction Parameters

-0.27 -1.52 1.94 0.78 -0.04 1.19 1.04 0.90 1.42 -0.04 1.95 1.39 -1.89 -0.31 1.04 0.89 -1.03 -0.89

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/NorthSouth exists, deleting

Saving efficiency 5.84006

Testing Motion Correction Parameters

-0.08 -1.03 1.26 0.51 -1.18 0.92 0.46 0.36 0.86 -0.12 1.12 0.91 -1.68 -0.18 0.46 0.36 -0.45 -0.35

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/SouthDirection exists, deleting

Saving efficiency 8.40369

Testing Motion Correction Parameters

-0.10 0.23 -0.24 -0.10 2.28 -0.29 0.07 0.11 -0.12 0.16 -0.13 -0.18 0.67 0.01 0.06 0.11 -0.07 -0.11

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/WestDirection exists, deleting

Saving efficiency 8.82888

Testing Motion Correction Parameters

0.38 0.23 -0.40 -0.48 -0.24 -0.12 0.04 0.05 -0.45 -0.23 -0.64 -0.59 0.31 0.36 0.04 0.05 -0.04 -0.05

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/WestEast exists, deleting

Saving efficiency 6.07489

Testing Motion Correction Parameters

0.19 -0.14 0.07 -0.22 0.53 0.15 0.73 0.72 -0.01 -0.21 -0.03 -0.16 0.02 0.24 0.73 0.72 -0.73 -0.72

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.000 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/Xtmp.mat

XCond = 67.2393 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.482103 (t=0.000481254)

2 -0.25 -0.268489 (t=0.00095232)

3 0 -0.0609972 (t=0.00129186)

4 0.25 0.133733 (t=0.00162726)

5 0.5 0.303554 (t=0.00196589)

AR1 Correction M: 0.0946469 1.26431

Computing contrast matrices

OLS Beta Pass

run 9 t= 0.0

reading data ... 0.509026

Global Mean 669.50

Global In-Mask Mean = 669.496 (870.252)

Rescale Target = 100

RescaleFactor = 0.149366

OLS Residual Pass

run 9 t= 0.0

reading data ... 0.521533

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.0011589 sec

seg 1 4999 nrho1 = 0.083

seg 2 4999 nrho1 = 0.096

seg 3 4999 nrho1 = 0.103

seg 4 4999 nrho1 = 0.109

seg 5 4999 nrho1 = 0.113

seg 6 4999 nrho1 = 0.116

seg 7 4999 nrho1 = 0.118

seg 8 4999 nrho1 = 0.120

seg 9 4999 nrho1 = 0.121

seg 10 4999 nrho1 = 0.123

seg 11 4999 nrho1 = 0.125

seg 12 4999 nrho1 = 0.126

seg 13 4999 nrho1 = 0.128

seg 14 4999 nrho1 = 0.130

seg 15 4999 nrho1 = 0.131

seg 16 4999 nrho1 = 0.133

seg 17 4999 nrho1 = 0.134

seg 18 4999 nrho1 = 0.136

seg 19 4999 nrho1 = 0.137

seg 20 4999 nrho1 = 0.138

seg 21 4999 nrho1 = 0.139

seg 22 4999 nrho1 = 0.141

seg 23 4999 nrho1 = 0.142

seg 24 4999 nrho1 = 0.144

seg 25 4999 nrho1 = 0.145

seg 26 4999 nrho1 = 0.147

seg 27 4999 nrho1 = 0.149

seg 28 4999 nrho1 = 0.151

seg 29 4999 nrho1 = 0.155

seg 30 4984 nrho1 = 0.164

GLS Beta Pass

run 9 t= 0.0

GLS Residual Pass

run 9 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/EastDirection exists, deleting

Saving efficiency 8.37828

Testing Motion Correction Parameters

-0.43 -0.20 0.33 -0.04 -0.67 -0.07 0.25 0.07 2.13 0.56 0.88 0.05 -0.61 0.01 0.25 0.07 -0.23 -0.06

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/NorthDirection exists, deleting

Saving efficiency 8.30357

Testing Motion Correction Parameters

-0.11 -0.10 -0.03 0.07 -0.04 -0.09 0.02 0.11 -0.52 0.11 0.08 0.08 0.02 -0.08 0.02 0.11 -0.03 -0.11

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/NorthSouth exists, deleting

Saving efficiency 5.34095

Testing Motion Correction Parameters

-0.22 -0.11 0.19 -0.03 -0.41 -0.03 -0.19 -0.17 -0.14 0.28 0.45 0.02 -0.35 0.01 -0.19 -0.17 0.19 0.17

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/SouthDirection exists, deleting

Saving efficiency 7.74613

Testing Motion Correction Parameters

0.24 0.08 -0.39 0.12 0.69 -0.03 0.38 0.46 -0.18 -0.35 -0.69 0.04 0.68 -0.10 0.37 0.46 -0.38 -0.46

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/WestDirection exists, deleting

Saving efficiency 8.64267

Testing Motion Correction Parameters

0.26 0.22 0.08 -0.17 0.01 0.22 -0.87 -0.84 -0.67 -0.26 -0.16 -0.19 -0.08 0.18 -0.87 -0.84 0.86 0.82

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/WestEast exists, deleting

Saving efficiency 5.84935

Testing Motion Correction Parameters

0.45 0.27 -0.13 -0.07 0.37 0.18 -0.70 -0.51 -1.84 -0.53 -0.63 -0.15 0.26 0.10 -0.70 -0.51 0.68 0.49

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr012

Excluding 4 points

ERROR: fast_st2fir: two or more presentations are simultaneous

ERROR: creating FIR design matrix for Condition01

Dot indexing is not supported for variables of this type.

Error in flac_customize (line 354)

if(~isempty(flacnew.TFmtx))

Error in fast_selxavg3b (line 179)

flac = flac_customize(flac);

...

---

ERROR: fast_selxavg3() failed\n

Ninas-MacBook-Pro:FunctionalData ninakhatibi$

On Wed, Dec 23, 2020 at 9:27 PM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu> wrote: Can you send the full terminal output? Do all subjects have the same paradigm files?

On 12/21/2020 5:24 AM, Nina Khatibi wrote:

External Email - Use Caution

No, I have checked them all.

On Thu, Dec 17, 2020 at 6:05 PM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu> wrote: Are there presentations that are simultaneous?

On 12/12/2020 3:19 AM, Nina Khatibi wrote:

External Email - Use Caution

Hi, I'm using a functional analyse with selxavg3-sess, i have 25 subjects and each subject contains 15 runs, I've done plenty of analyses with different paradigm files, but now with a paradigm file of 5 conditions, I face an error on subject 22 run 12, which I can not solve.I wonder if you can help me. I'm using macbook pro 2018, macOS Mojave 10.14.6 and freesurfer-darwin-macOS-7.1.1-20200811-8b40551

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr012

Excluding 4 points

ERROR: fast_st2fir: two or more presentations are simultaneous

ERROR: creating FIR design matrix for Condition01

Dot indexing is not supported for variables of this type.

Error in flac_customize (line 354)

if(~isempty(flacnew.TFmtx))

Error in fast_selxavg3b (line 179)

flac = flac_customize(flac);

...

---

ERROR: fast_selxavg3() failed\n

Regards,

Nina

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There appears to be some issue with this file in that there is some binary characters in it, though I can't actually find them (maybe at the end). In any event, I would try creating this file again from scratch.

On 1/4/2021 10:28 AM, Nina Khatibi wrote:

External Email - Use Caution

Here is the par file for Subject22,Run012

On Mon, Jan 4, 2021 at 7:07 AM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu> wrote: Can you send the par file for run 012?

On 12/28/2020 9:24 AM, Nina Khatibi wrote:

External Email - Use Caution

Sure. Yes, all subjects have a paradigm file generated by matlab. It's full terminal output for "selxavg3-sess -sf /Volumes/ADATA/FunctionalData/SubjectsList -analysis fsaverage5Con2Sec.lh -run-wise " for subject22

Surface data fsaverage lh

--------------------------------------------------------------

selxavg3-sess logfile is /Volumes/ADATA/FunctionalData/log/selxavg3-sess-bold-fsaverage5Con2Sec.lh-201228173226.log

--------------------------------------------------------------

selxavg3-sess log file

/Applications/freesurfer/7.1.1/fsfast/bin/selxavg3-sess

-sf /Volumes/ADATA/FunctionalData/SubjectsList -analysis fsaverage5Con2Sec.lh -run-wise

FreeSurferEnv.csh 7.1.1

uid=501(ninakhatibi) gid=20(staff) groups=20(staff),12(everyone),61(localaccounts),79(_appserverusr),80(admin),81(_appserveradm),98(_lpadmin),701(com.apple.sharepoint.group.1),33(_appstore),100(_lpoperator),204(_developer),250(_analyticsusers),395(com.apple.access_ftp),398(com.apple.access_screensharing),399(com.apple.access_ssh)

/Volumes/ADATA/FunctionalData

Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64

Mon Dec 28 17:32:29 +0330 2020

preproc-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -a fsaverage5Con2Sec.lh -nolog

--------------------------------------------------------------

preproc-sess logfile is /dev/null

--------------------------------------------------------------

FreeSurferEnv.csh 7.1.1

ninakhatibi

setenv FREESURFER_HOME /Applications/freesurfer/7.1.1

setenv SUBJECTS_DIR /Users/ninakhatibi/Desktop/Project/Recon

Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64

/Volumes/ADATA/FunctionalData

/Applications/freesurfer/7.1.1/fsfast/bin/preproc-sess

-s Subject22 -d /Volumes/ADATA/FunctionalData -a fsaverage5Con2Sec.lh -nolog

Mon Dec 28 17:32:31 +0330 2020

instem f

mc 1 f fmcpr

stc 0 fmcpr

sm 0

mask 1 brain

Subject22 Template -----------------------------

mktemplate-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -funcstem f -nolog -update

Session: /Volumes/ADATA/FunctionalData/Subject22 ----------------

Mon Dec 28 17:32:31 +0330 2020

Detected input format at nii

Subject22 Update not needed

Run: 003 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 003 Update not needed

Run: 004 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 004 Update not needed

Run: 005 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 005 Update not needed

Run: 006 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 006 Update not needed

Run: 007 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 007 Update not needed

Run: 008 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 008 Update not needed

Run: 009 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 009 Update not needed

Run: 010 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 010 Update not needed

Run: 011 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 011 Update not needed

Run: 012 ----------------

Mon Dec 28 17:32:32 +0330 2020

Subject22 012 Update not needed

Run: 013 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 013 Update not needed

Run: 014 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 014 Update not needed

Run: 015 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 015 Update not needed

Run: 016 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 016 Update not needed

Run: 017 ----------------

Mon Dec 28 17:32:33 +0330 2020

Subject22 017 Update not needed

Mon Dec 28 17:32:33 +0330 2020

mktemplate-sess completed

Subject22 Registration -----------------------------

register-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -delete-dat -dof 6 -bold -per-run -nolog -update -init-coreg

--------------------------------------------------------------

register-sess logfile is /dev/null

--------------------------------------------------------------

Mon Dec 28 17:32:33 +0330 2020

setenv SUBJECTS_DIR /Users/ninakhatibi/Desktop/Project/Recon

cd /Volumes/ADATA/FunctionalData

/Applications/freesurfer/7.1.1/fsfast/bin/register-sess -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -delete-dat -dof 6 -bold -per-run -nolog -update -init-coreg

freesurfer-darwin-macOS-7.1.1-20200811-8b40551

Darwin Ninas-MacBook-Pro.local 18.7.0 Darwin Kernel Version 18.7.0: Fri Oct 30 12:37:06 PDT 2020; root:xnu-4903.278.44.0.2~1/RELEASE_X86_64 x86_64

Session: /Volumes/ADATA/FunctionalData/Subject22 ----------------

Mon Dec 28 17:32:33 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22

Run: 003 ----------------

Mon Dec 28 17:32:33 +0330 2020

Update not needed

Run: 004 ----------------

Mon Dec 28 17:32:33 +0330 2020

Update not needed

Run: 005 ----------------

Mon Dec 28 17:32:33 +0330 2020

Update not needed

Run: 006 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 007 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 008 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 009 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 010 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 011 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 012 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 013 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 014 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 015 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 016 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Run: 017 ----------------

Mon Dec 28 17:32:34 +0330 2020

Update not needed

Mon Dec 28 17:32:34 +0330 2020

register-sess completed

Subject22 Mask ------------------------

mkbrainmask-sess -maskstem brain -fsd bold -s Subject22 -d /Volumes/ADATA/FunctionalData -per-run -nolog -update

------------------------------------------------

/Volumes/ADATA/FunctionalData/Subject22

Mon Dec 28 17:32:34 +0330 2020

Subject22 Update not needed for session-level mask

Subject22 Update not needed for run 003 mask

Subject22 Update not needed for run 004 mask

Subject22 Update not needed for run 005 mask

Subject22 Update not needed for run 006 mask

Subject22 Update not needed for run 007 mask

Subject22 Update not needed for run 008 mask

Subject22 Update not needed for run 009 mask

Subject22 Update not needed for run 010 mask

Subject22 Update not needed for run 011 mask

Subject22 Update not needed for run 012 mask

Subject22 Update not needed for run 013 mask

Subject22 Update not needed for run 014 mask

Subject22 Update not needed for run 015 mask

Subject22 Update not needed for run 016 mask

Subject22 Update not needed for run 017 mask

Subject22 Update not needed for run 003 meanval

Subject22 Update not needed for run 004 meanval

Subject22 Update not needed for run 005 meanval

Subject22 Update not needed for run 006 meanval

Subject22 Update not needed for run 007 meanval

Subject22 Update not needed for run 008 meanval

Subject22 Update not needed for run 009 meanval

Subject22 Update not needed for run 010 meanval

Subject22 Update not needed for run 011 meanval

Subject22 Update not needed for run 012 meanval

Subject22 Update not needed for run 013 meanval

Subject22 Update not needed for run 014 meanval

Subject22 Update not needed for run 015 meanval

Subject22 Update not needed for run 016 meanval

Subject22 Update not needed for run 017 meanval

Mon Dec 28 17:32:36 +0330 2020

mkbrainmask-sess done

Subject22 MC -----------------------------

mc-sess -fstem f -fmcstem fmcpr -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -per-run -nolog -update

Logfile is /dev/null

-------------------------------------------

/Volumes/ADATA/FunctionalData/Subject22

RunList: 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017

Subject22 003 Update not needed

Subject22 004 Update not needed

Subject22 005 Update not needed

Subject22 006 Update not needed

Subject22 007 Update not needed

Subject22 008 Update not needed

Subject22 009 Update not needed

Subject22 010 Update not needed

Subject22 011 Update not needed

Subject22 012 Update not needed

Subject22 013 Update not needed

Subject22 014 Update not needed

Subject22 015 Update not needed

Subject22 016 Update not needed

Subject22 017 Update not needed

Mon Dec 28 17:32:37 +0330 2020

mc-sess completed SUCCESSFULLY

Subject22 To Surface -----------------------------

rawfunc2surf-sess -fwhm 5 -s Subject22 -d /Volumes/ADATA/FunctionalData -fsd bold -hemi lh -trgsubject fsaverage -nolog -update -per-run

instem fmcpr

outstem fmcpr.sm5.fsaverage.hemi

------------------------------

1/1 Subject22

1/1 Subject22 003 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/003/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 004 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/004/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 005 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/005/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 006 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/006/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 007 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/007/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 008 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/008/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 009 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/009/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 010 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/010/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 011 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/011/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 012 lh ---------

Mon Dec 28 17:32:37 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/012/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 013 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/013/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 014 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/014/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 015 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/015/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 016 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/016/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 017 lh ---------

Mon Dec 28 17:32:38 +0330 2020

/Volumes/ADATA/FunctionalData/Subject22/bold/017/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

/Volumes/ADATA/FunctionalData/Subject22/bold/masks/brain.fsaverage.lh.pr.nii.gz does not need updating

1/1 Subject22 003 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 003 Update not needed

1/1 Subject22 004 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 004 Update not needed

1/1 Subject22 005 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 005 Update not needed

1/1 Subject22 006 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 006 Update not needed

1/1 Subject22 007 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 007 Update not needed

1/1 Subject22 008 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 008 Update not needed

1/1 Subject22 009 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 009 Update not needed

1/1 Subject22 010 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 010 Update not needed

1/1 Subject22 011 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 011 Update not needed

1/1 Subject22 012 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 012 Update not needed

1/1 Subject22 013 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 013 Update not needed

1/1 Subject22 014 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 014 Update not needed

1/1 Subject22 015 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 015 Update not needed

1/1 Subject22 016 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 016 Update not needed

1/1 Subject22 017 lh ---------

Mon Dec 28 17:32:38 +0330 2020

Subject22 017 Update not needed

Mon Dec 28 17:32:39 +0330 2020

rawfunc2surf-sess completed

----------------------------------------

Started at Mon Dec 28 17:32:31 +0330 2020

Ended at Mon Dec 28 17:32:39 +0330 2020

preproc-sess done

-------------------------------------------

1/1 /Volumes/ADATA/FunctionalData/Subject22

Mon Dec 28 17:32:40 +0330 2020

anadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh

DoGLMFit = 1

DoContrasts = 1

UpdateNeeded = 1

Subject22 Update needed

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/sxa3.config.txt

MLF is /tmp/selxavg3-sess-12836.m

------------------------------------------

% Mon Dec 28 17:32:39 +0330 2020

% /Volumes/ADATA/FunctionalData

% fsaverage5Con2Sec.lh

which fast_selxavg3

which fast_ldanaflac

which MRIread

fast_selxavg3b('/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/sxa3.config.txt')

if(~fast_fileexists('/tmp/selxavg3-sess-12836.ok')); quit; end

%--------------------------------

quit;

------------------------------------------

------------------------------------------

------- matlab output --------------------

< M A T L A B (R) >

Copyright 1984-2019 The MathWorks, Inc.

R2019b (9.7.0.1190202) 64-bit (maci64)

August 21, 2019

To get started, type doc.

For product information, visit MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be www.mathworks.comhttp://secure-web.cisco.com/1STxfBY3WGFvD3gXXkN4m2TGN9E2-ey5ooWk-I0oykgFvg0S6cGqE7hUJ_YvLX-QZysSf-Fc6OhVqyl76vmExO_dYNKJEjDfCnV9oGoCy_Ct17kgOIvi_v80tqJwKlT0tDj-SLsn9b6gv1Z4gb469cTVGMiG51rI9lIZXAvpwQ6CdxLWh57GXmXYsaYDWW4A-LWN6WHsNuDpiL-6uIJ_O7RQLE9ECeqawGb92oSV0cij2tXiNbwUy9UJVI4iY1oHYol9w1IdK9zsU7f_lvE5IgQ/http%3A%2F%2Fwww.mathworks.com.

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...

...

>> /Applications/freesurfer/7.1.1/fsfast/toolbox/fast_selxavg3.m

...

/Applications/freesurfer/7.1.1/fsfast/toolbox/fast_ldanaflac.m

...

/Applications/freesurfer/7.1.1/matlab/MRIread.m

...

...

...

...

...

starting fast_selxavg3b

#@# Subject22 ###############################

/Volumes/ADATA/FunctionalData/Subject22

-------------------------

fast_selxavg3b.m 7.1.1

-------------------------

outtop = /Volumes/ADATA/FunctionalData

Extension format = nii.gz

INFO: key nSliceGroups unrecognized, line 11, skipping

1 EastDirection.mat

2 NorthDirection.mat

3 NorthSouth.mat

4 SouthDirection.mat

5 WestDirection.mat

6 WestEast.mat

Excluding 4 points

nruns = 15

autostimdur =

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.002 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/Xtmp.mat

XCond = 65.9772 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.490734 (t=0.00982513)

2 -0.25 -0.271862 (t=0.0107347)

3 0 -0.0630477 (t=0.0121373)

4 0.25 0.131482 (t=0.0128401)

5 0.5 0.30087 (t=0.0164747)

AR1 Correction M: 0.0987533 1.25547

Computing contrast matrices

OLS Beta Pass

run 1 t= 0.0

reading data ... 0.57665

Global Mean 667.87

Global In-Mask Mean = 667.874 (850.594)

Rescale Target = 100

RescaleFactor = 0.149729

OLS Residual Pass

run 1 t= 0.0

reading data ... 0.576758

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 7166 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.0013297 sec

seg 1 4999 nrho1 = 0.409

seg 2 4999 nrho1 = 0.473

seg 3 4999 nrho1 = 0.515

seg 4 4999 nrho1 = 0.550

seg 5 4999 nrho1 = 0.581

seg 6 4999 nrho1 = 0.604

seg 7 4999 nrho1 = 0.621

seg 8 4999 nrho1 = 0.634

seg 9 4999 nrho1 = 0.644

seg 10 4999 nrho1 = 0.656

seg 11 4999 nrho1 = 0.668

seg 12 4999 nrho1 = 0.680

seg 13 4999 nrho1 = 0.692

seg 14 4999 nrho1 = 0.704

seg 15 4999 nrho1 = 0.715

seg 16 4999 nrho1 = 0.725

seg 17 4999 nrho1 = 0.736

seg 18 4999 nrho1 = 0.746

seg 19 4999 nrho1 = 0.756

seg 20 4999 nrho1 = 0.766

seg 21 4999 nrho1 = 0.777

seg 22 4999 nrho1 = 0.790

seg 23 4999 nrho1 = 0.804

seg 24 4999 nrho1 = 0.816

seg 25 4999 nrho1 = 0.828

seg 26 4999 nrho1 = 0.841

seg 27 4999 nrho1 = 0.858

seg 28 4999 nrho1 = 0.875

seg 29 4999 nrho1 = 0.936

seg 30 4984 nrho1 = 0.996

GLS Beta Pass

run 1 t= 0.0

GLS Residual Pass

run 1 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/EastDirection exists, deleting

Saving efficiency 8.41876

Testing Motion Correction Parameters

0.28 0.31 -0.01 0.24 1.14 0.38 -0.26 -0.37 -0.22 0.04 -0.14 -0.47 0.71 -0.14 -0.27 -0.37 0.26 0.37

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/NorthDirection exists, deleting

Saving efficiency 6.95623

Testing Motion Correction Parameters

0.10 0.64 0.80 0.71 -0.21 0.59 -0.06 -0.09 0.16 0.39 0.43 -0.48 -1.33 -0.74 -0.06 -0.09 0.06 0.10

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/NorthSouth exists, deleting

Saving efficiency 4.58659

Testing Motion Correction Parameters

-0.26 0.15 0.41 0.19 -0.15 0.06 -0.18 -0.35 0.29 0.36 0.46 -0.07 -0.69 -0.28 -0.18 -0.35 0.18 0.36

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/SouthDirection exists, deleting

Saving efficiency 7.74553

Testing Motion Correction Parameters

0.71 0.27 -0.00 0.26 0.04 0.46 0.25 0.54 -0.33 -0.19 -0.32 -0.31 0.03 -0.12 0.25 0.53 -0.26 -0.55

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/WestDirection exists, deleting

Saving efficiency 9.01186

Testing Motion Correction Parameters

-1.70 -2.18 -0.92 -2.10 -0.80 -2.67 0.07 -0.01 0.42 -0.24 0.04 2.29 0.39 1.57 0.07 -0.01 -0.06 0.02

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/WestEast exists, deleting

Saving efficiency 5.89895

Testing Motion Correction Parameters

-1.16 -1.43 -0.45 -1.32 -1.32 -1.76 0.21 0.20 0.40 -0.17 0.12 1.67 -0.12 0.94 0.21 0.20 -0.20 -0.20

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr003/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.001 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/Xtmp.mat

XCond = 95.1683 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.482498 (t=0.00109856)

2 -0.25 -0.268426 (t=0.00193983)

3 0 -0.0620188 (t=0.00228293)

4 0.25 0.130658 (t=0.00255922)

5 0.5 0.29742 (t=0.00282913)

AR1 Correction M: 0.0980109 1.27332

Computing contrast matrices

OLS Beta Pass

run 2 t= 0.0

reading data ... 0.52949

Global Mean 670.01

Global In-Mask Mean = 670.015 (867.091)

Rescale Target = 100

RescaleFactor = 0.14925

OLS Residual Pass

run 2 t= 0.0

reading data ... 0.545993

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00130471 sec

seg 1 4999 nrho1 = 0.114

seg 2 4999 nrho1 = 0.173

seg 3 4999 nrho1 = 0.203

seg 4 4999 nrho1 = 0.220

seg 5 4999 nrho1 = 0.231

seg 6 4999 nrho1 = 0.239

seg 7 4999 nrho1 = 0.245

seg 8 4999 nrho1 = 0.251

seg 9 4999 nrho1 = 0.257

seg 10 4999 nrho1 = 0.262

seg 11 4999 nrho1 = 0.267

seg 12 4999 nrho1 = 0.272

seg 13 4999 nrho1 = 0.276

seg 14 4999 nrho1 = 0.281

seg 15 4999 nrho1 = 0.284

seg 16 4999 nrho1 = 0.288

seg 17 4999 nrho1 = 0.292

seg 18 4999 nrho1 = 0.295

seg 19 4999 nrho1 = 0.299

seg 20 4999 nrho1 = 0.303

seg 21 4999 nrho1 = 0.307

seg 22 4999 nrho1 = 0.311

seg 23 4999 nrho1 = 0.316

seg 24 4999 nrho1 = 0.320

seg 25 4999 nrho1 = 0.325

seg 26 4999 nrho1 = 0.330

seg 27 4999 nrho1 = 0.336

seg 28 4999 nrho1 = 0.343

seg 29 4999 nrho1 = 0.356

seg 30 4984 nrho1 = 0.386

GLS Beta Pass

run 2 t= 0.0

GLS Residual Pass

run 2 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/EastDirection exists, deleting

Saving efficiency 8.20003

Testing Motion Correction Parameters

-0.41 -1.27 -1.18 1.30 -0.33 1.28 -0.13 -0.33 0.67 -0.71 0.09 1.28 0.32 0.28 -0.13 -0.33 0.14 0.35

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/NorthDirection exists, deleting

Saving efficiency 9.04583

Testing Motion Correction Parameters

0.19 -0.58 -0.53 0.61 -0.09 0.64 -0.06 -0.01 0.12 -0.96 -0.45 0.59 0.23 0.45 -0.05 -0.01 0.06 0.01

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/NorthSouth exists, deleting

Saving efficiency 6.25977

Testing Motion Correction Parameters

0.31 -2.21 -2.07 2.33 -0.20 2.44 -0.34 -0.29 0.10 -3.33 -1.14 2.25 0.83 1.47 -0.34 -0.30 0.35 0.30

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/SouthDirection exists, deleting

Saving efficiency 9.31318

Testing Motion Correction Parameters

-0.28 3.04 2.85 -3.18 0.24 -3.33 0.53 0.53 -0.04 4.30 1.32 -3.08 -1.13 -1.92 0.53 0.54 -0.54 -0.53

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/WestDirection exists, deleting

Saving efficiency 8.41973

Testing Motion Correction Parameters

0.52 -0.07 -0.08 0.07 0.18 0.11 -0.22 -0.09 -0.83 -0.59 -0.66 0.07 0.20 0.42 -0.22 -0.09 0.21 0.08

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/WestEast exists, deleting

Saving efficiency 5.39385

Testing Motion Correction Parameters

0.60 0.54 0.50 -0.55 0.32 -0.51 -0.04 0.12 -0.98 0.04 -0.42 -0.55 -0.05 0.05 -0.04 0.12 0.03 -0.13

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr004/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.001 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/Xtmp.mat

XCond = 165.337 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.479228 (t=0.0020821)

2 -0.25 -0.263675 (t=0.00249911)

3 0 -0.0551031 (t=0.00277528)

4 0.25 0.141897 (t=0.00304782)

5 0.5 0.317421 (t=0.00331738)

AR1 Correction M: 0.0845885 1.24876

Computing contrast matrices

OLS Beta Pass

run 3 t= 0.0

reading data ... 0.510008

Global Mean 677.59

Global In-Mask Mean = 677.591 (883.711)

Rescale Target = 100

RescaleFactor = 0.147582

OLS Residual Pass

run 3 t= 0.0

reading data ... 0.521663

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00119298 sec

seg 1 4999 nrho1 = 0.108

seg 2 4999 nrho1 = 0.128

seg 3 4999 nrho1 = 0.140

seg 4 4999 nrho1 = 0.151

seg 5 4999 nrho1 = 0.159

seg 6 4999 nrho1 = 0.165

seg 7 4999 nrho1 = 0.172

seg 8 4999 nrho1 = 0.177

seg 9 4999 nrho1 = 0.181

seg 10 4999 nrho1 = 0.186

seg 11 4999 nrho1 = 0.192

seg 12 4999 nrho1 = 0.196

seg 13 4999 nrho1 = 0.201

seg 14 4999 nrho1 = 0.205

seg 15 4999 nrho1 = 0.208

seg 16 4999 nrho1 = 0.212

seg 17 4999 nrho1 = 0.215

seg 18 4999 nrho1 = 0.219

seg 19 4999 nrho1 = 0.222

seg 20 4999 nrho1 = 0.225

seg 21 4999 nrho1 = 0.228

seg 22 4999 nrho1 = 0.231

seg 23 4999 nrho1 = 0.234

seg 24 4999 nrho1 = 0.238

seg 25 4999 nrho1 = 0.243

seg 26 4999 nrho1 = 0.247

seg 27 4999 nrho1 = 0.252

seg 28 4999 nrho1 = 0.258

seg 29 4999 nrho1 = 0.268

seg 30 4984 nrho1 = 0.286

GLS Beta Pass

run 3 t= 0.0

GLS Residual Pass

run 3 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/EastDirection exists, deleting

Saving efficiency 8.31283

Testing Motion Correction Parameters

1.27 1.46 -0.08 0.81 0.18 -0.74 0.04 -0.03 0.80 -0.78 -1.47 -0.05 0.19 -0.79 0.04 -0.03 -0.04 0.04

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/NorthDirection exists, deleting

Saving efficiency 7.55563

Testing Motion Correction Parameters

-0.61 -0.56 -0.04 -0.48 0.03 0.44 -0.11 -0.05 -0.38 0.43 0.53 -0.05 0.06 0.46 -0.11 -0.05 0.10 0.05

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/NorthSouth exists, deleting

Saving efficiency 4.41766

Testing Motion Correction Parameters

-0.03 0.11 -0.17 -0.09 0.05 0.09 0.09 0.13 -0.05 0.08 -0.12 -0.16 0.23 0.09 0.09 0.13 -0.09 -0.13

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/SouthDirection exists, deleting

Saving efficiency 6.32341

Testing Motion Correction Parameters

-0.45 -0.82 0.24 -0.20 -0.06 0.18 -0.28 -0.29 -0.23 0.20 0.82 0.21 -0.33 0.20 -0.28 -0.29 0.28 0.29

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/WestDirection exists, deleting

Saving efficiency 7.86352

Testing Motion Correction Parameters

0.12 0.29 -0.12 0.05 -0.13 -0.04 0.42 0.47 0.02 -0.04 -0.26 -0.11 0.08 -0.05 0.42 0.47 -0.42 -0.47

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/WestEast exists, deleting

Saving efficiency 5.61933

Testing Motion Correction Parameters

-0.50 -0.44 -0.02 -0.36 -0.20 0.35 0.20 0.29 -0.40 0.36 0.46 -0.04 -0.06 0.36 0.20 0.29 -0.21 -0.30

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr005/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.001 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/Xtmp.mat

XCond = 60.7405 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.475928 (t=0.00136245)

2 -0.25 -0.264094 (t=0.00370552)

3 0 -0.0585378 (t=0.004074)

4 0.25 0.133993 (t=0.00442966)

5 0.5 0.301425 (t=0.00478028)

AR1 Correction M: 0.0927915 1.27762

Computing contrast matrices

OLS Beta Pass

run 4 t= 0.0

reading data ... 0.513164

Global Mean 678.87

Global In-Mask Mean = 678.868 (883.905)

Rescale Target = 100

RescaleFactor = 0.147304

OLS Residual Pass

run 4 t= 0.0

reading data ... 0.518631

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00132119 sec

seg 1 4999 nrho1 = 0.109

seg 2 4999 nrho1 = 0.124

seg 3 4999 nrho1 = 0.132

seg 4 4999 nrho1 = 0.136

seg 5 4999 nrho1 = 0.140

seg 6 4999 nrho1 = 0.143

seg 7 4999 nrho1 = 0.146

seg 8 4999 nrho1 = 0.149

seg 9 4999 nrho1 = 0.153

seg 10 4999 nrho1 = 0.155

seg 11 4999 nrho1 = 0.158

seg 12 4999 nrho1 = 0.161

seg 13 4999 nrho1 = 0.164

seg 14 4999 nrho1 = 0.166

seg 15 4999 nrho1 = 0.169

seg 16 4999 nrho1 = 0.172

seg 17 4999 nrho1 = 0.175

seg 18 4999 nrho1 = 0.177

seg 19 4999 nrho1 = 0.180

seg 20 4999 nrho1 = 0.183

seg 21 4999 nrho1 = 0.185

seg 22 4999 nrho1 = 0.188

seg 23 4999 nrho1 = 0.191

seg 24 4999 nrho1 = 0.193

seg 25 4999 nrho1 = 0.197

seg 26 4999 nrho1 = 0.200

seg 27 4999 nrho1 = 0.204

seg 28 4999 nrho1 = 0.209

seg 29 4999 nrho1 = 0.214

seg 30 4984 nrho1 = 0.225

GLS Beta Pass

run 4 t= 0.0

GLS Residual Pass

run 4 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/EastDirection exists, deleting

Saving efficiency 7.0708

Testing Motion Correction Parameters

-2.33 0.08 -0.51 -1.63 -2.43 -2.36 -0.14 -0.14 -0.35 2.32 1.42 -1.74 -0.27 1.29 -0.13 -0.14 0.13 0.14

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/NorthDirection exists, deleting

Saving efficiency 8.47542

Testing Motion Correction Parameters

-1.17 0.62 -0.06 -0.59 -0.53 -1.20 -0.60 -0.45 -2.06 1.20 1.07 -0.69 -0.18 0.42 -0.60 -0.45 0.58 0.43

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/NorthSouth exists, deleting

Saving efficiency 5.23588

Testing Motion Correction Parameters

-3.21 0.33 -0.84 -2.36 -1.90 -2.95 -0.52 -0.37 -2.17 3.23 1.72 -2.58 0.04 1.94 -0.51 -0.37 0.49 0.35

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/SouthDirection exists, deleting

Saving efficiency 7.88643

Testing Motion Correction Parameters

3.93 -0.02 1.58 3.42 2.67 3.41 0.25 0.16 1.27 -3.90 -1.54 3.62 -0.26 -2.96 0.24 0.16 -0.23 -0.15

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/WestDirection exists, deleting

Saving efficiency 8.82303

Testing Motion Correction Parameters

0.42 -0.77 -0.55 -0.06 0.53 0.70 0.47 0.45 0.88 -0.45 -1.10 -0.01 1.11 0.18 0.46 0.45 -0.46 -0.44

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/WestEast exists, deleting

Saving efficiency 4.94523

Testing Motion Correction Parameters

1.64 -0.44 0.01 0.75 1.80 1.92 0.34 0.34 0.74 -1.67 -1.65 0.85 0.78 -0.49 0.34 0.34 -0.34 -0.33

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr006/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.005 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/Xtmp.mat

XCond = 124.613 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.486086 (t=0.00162174)

2 -0.25 -0.270277 (t=0.00303463)

3 0 -0.0627359 (t=0.0033982)

4 0.25 0.131466 (t=0.00375891)

5 0.5 0.300554 (t=0.00411693)

AR1 Correction M: 0.0977823 1.26308

Computing contrast matrices

OLS Beta Pass

run 5 t= 0.0

reading data ... 0.520289

Global Mean 676.09

Global In-Mask Mean = 676.093 (877.252)

Rescale Target = 100

RescaleFactor = 0.147909

OLS Residual Pass

run 5 t= 0.0

reading data ... 0.519612

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00187968 sec

seg 1 4999 nrho1 = 0.085

seg 2 4999 nrho1 = 0.105

seg 3 4999 nrho1 = 0.115

seg 4 4999 nrho1 = 0.123

seg 5 4999 nrho1 = 0.130

seg 6 4999 nrho1 = 0.137

seg 7 4999 nrho1 = 0.142

seg 8 4999 nrho1 = 0.146

seg 9 4999 nrho1 = 0.150

seg 10 4999 nrho1 = 0.153

seg 11 4999 nrho1 = 0.157

seg 12 4999 nrho1 = 0.160

seg 13 4999 nrho1 = 0.163

seg 14 4999 nrho1 = 0.165

seg 15 4999 nrho1 = 0.168

seg 16 4999 nrho1 = 0.170

seg 17 4999 nrho1 = 0.173

seg 18 4999 nrho1 = 0.175

seg 19 4999 nrho1 = 0.178

seg 20 4999 nrho1 = 0.181

seg 21 4998 nrho1 = 0.184

seg 22 5000 nrho1 = 0.187

seg 23 4999 nrho1 = 0.189

seg 24 4999 nrho1 = 0.192

seg 25 4999 nrho1 = 0.196

seg 26 4999 nrho1 = 0.200

seg 27 4999 nrho1 = 0.204

seg 28 4999 nrho1 = 0.208

seg 29 4999 nrho1 = 0.212

seg 30 4984 nrho1 = 0.221

GLS Beta Pass

run 5 t= 0.0

GLS Residual Pass

run 5 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/EastDirection exists, deleting

Saving efficiency 8.32033

Testing Motion Correction Parameters

-0.23 1.71 1.63 -1.15 0.51 -0.83 0.71 0.66 -0.01 0.56 1.08 -1.21 -0.60 1.24 0.71 0.67 -0.72 -0.67

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/NorthDirection exists, deleting

Saving efficiency 8.00595

Testing Motion Correction Parameters

-0.23 -0.44 -0.55 0.66 0.65 0.38 0.13 0.27 -0.51 0.15 -0.13 0.64 0.81 -0.78 0.13 0.27 -0.14 -0.29

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/NorthSouth exists, deleting

Saving efficiency 4.89576

Testing Motion Correction Parameters

-0.14 0.52 0.36 -0.27 0.67 -0.28 -0.19 -0.07 -1.09 0.26 0.32 -0.29 0.03 0.24 -0.19 -0.07 0.18 0.06

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/SouthDirection exists, deleting

Saving efficiency 7.34061

Testing Motion Correction Parameters

0.02 -1.94 -1.65 1.51 -0.41 1.15 0.54 0.43 1.22 -0.28 -0.83 1.55 0.67 -1.57 0.54 0.43 -0.52 -0.42

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/WestDirection exists, deleting

Saving efficiency 7.63854

Testing Motion Correction Parameters

0.49 0.66 0.65 -1.02 -0.70 -0.67 -2.05 -2.12 -0.44 -0.35 0.05 -0.99 -0.93 1.14 -2.04 -2.11 2.06 2.12

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/WestEast exists, deleting

Saving efficiency 5.18212

Testing Motion Correction Parameters

0.45 -0.28 -0.26 0.02 -0.78 0.03 -1.76 -1.75 -0.23 -0.57 -0.47 0.03 -0.11 -0.01 -1.75 -1.76 1.77 1.76

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr007/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.001 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/Xtmp.mat

XCond = 51.8534 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.476763 (t=0.00135744)

2 -0.25 -0.264159 (t=0.00379904)

3 0 -0.0568164 (t=0.00417289)

4 0.25 0.138914 (t=0.00453842)

5 0.5 0.31205 (t=0.0048956)

AR1 Correction M: 0.0874009 1.2602

Computing contrast matrices

OLS Beta Pass

run 6 t= 0.0

reading data ... 0.525443

Global Mean 675.22

Global In-Mask Mean = 675.219 (879.593)

Rescale Target = 100

RescaleFactor = 0.1481

OLS Residual Pass

run 6 t= 0.0

reading data ... 0.518304

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00163141 sec

seg 1 4999 nrho1 = 0.065

seg 2 4999 nrho1 = 0.079

seg 3 4999 nrho1 = 0.097

seg 4 4999 nrho1 = 0.104

seg 5 4999 nrho1 = 0.109

seg 6 4999 nrho1 = 0.113

seg 7 4999 nrho1 = 0.118

seg 8 4999 nrho1 = 0.122

seg 9 4999 nrho1 = 0.126

seg 10 4999 nrho1 = 0.129

seg 11 4999 nrho1 = 0.132

seg 12 4999 nrho1 = 0.135

seg 13 4999 nrho1 = 0.138

seg 14 4999 nrho1 = 0.141

seg 15 4999 nrho1 = 0.143

seg 16 4999 nrho1 = 0.145

seg 17 4999 nrho1 = 0.147

seg 18 4999 nrho1 = 0.150

seg 19 4999 nrho1 = 0.152

seg 20 4999 nrho1 = 0.154

seg 21 4999 nrho1 = 0.156

seg 22 4999 nrho1 = 0.158

seg 23 4999 nrho1 = 0.160

seg 24 4999 nrho1 = 0.162

seg 25 4999 nrho1 = 0.164

seg 26 4999 nrho1 = 0.166

seg 27 4999 nrho1 = 0.169

seg 28 4999 nrho1 = 0.172

seg 29 4999 nrho1 = 0.176

seg 30 4984 nrho1 = 0.183

GLS Beta Pass

run 6 t= 0.0

GLS Residual Pass

run 6 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/EastDirection exists, deleting

Saving efficiency 8.35905

Testing Motion Correction Parameters

-0.20 0.68 0.46 -0.61 1.27 -0.67 0.32 0.32 -0.15 0.47 0.76 -0.65 -0.11 0.40 0.32 0.32 -0.32 -0.32

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/NorthDirection exists, deleting

Saving efficiency 7.88911

Testing Motion Correction Parameters

5.39 0.46 1.48 -0.63 1.58 -2.64 0.81 0.76 0.58 -4.78 -0.37 -0.53 -0.75 -0.47 0.80 0.77 -0.80 -0.75

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/NorthSouth exists, deleting

Saving efficiency 5.12416

Testing Motion Correction Parameters

3.95 2.59 3.69 -2.79 2.10 -4.95 1.82 1.69 0.70 -2.27 0.98 -2.68 -2.25 0.65 1.82 1.69 -1.81 -1.67

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/SouthDirection exists, deleting

Saving efficiency 7.5691

Testing Motion Correction Parameters

-1.07 -4.06 -4.12 4.05 -1.49 4.61 -1.98 -1.82 -0.50 0.07 -3.06 4.06 2.81 -2.36 -1.98 -1.82 1.97 1.81

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/WestDirection exists, deleting

Saving efficiency 8.57407

Testing Motion Correction Parameters

-2.13 1.40 0.61 -1.24 -1.33 -0.07 0.24 0.20 0.11 3.21 2.60 -1.33 -1.09 2.80 0.25 0.20 -0.24 -0.19

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/WestEast exists, deleting

Saving efficiency 5.89219

Testing Motion Correction Parameters

-0.78 0.21 0.05 -0.19 -1.83 0.30 -0.03 -0.06 0.17 0.94 0.54 -0.20 -0.44 0.85 -0.03 -0.06 0.04 0.06

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr008/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.000 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/Xtmp.mat

XCond = 101.806 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.477022 (t=0.00238827)

2 -0.25 -0.26476 (t=0.00292959)

3 0 -0.057918 (t=0.00329708)

4 0.25 0.137004 (t=0.00365946)

5 0.5 0.308384 (t=0.00401563)

AR1 Correction M: 0.0896574 1.26523

Computing contrast matrices

OLS Beta Pass

run 7 t= 0.0

reading data ... 0.528405

Global Mean 669.23

Global In-Mask Mean = 669.226 (876.627)

Rescale Target = 100

RescaleFactor = 0.149426

OLS Residual Pass

run 7 t= 0.0

reading data ... 0.542751

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00116701 sec

seg 1 4999 nrho1 = 0.075

seg 2 4999 nrho1 = 0.091

seg 3 4999 nrho1 = 0.100

seg 4 4999 nrho1 = 0.105

seg 5 4999 nrho1 = 0.108

seg 6 4999 nrho1 = 0.112

seg 7 4999 nrho1 = 0.115

seg 8 4999 nrho1 = 0.117

seg 9 4999 nrho1 = 0.119

seg 10 4999 nrho1 = 0.121

seg 11 4999 nrho1 = 0.123

seg 12 4999 nrho1 = 0.125

seg 13 4998 nrho1 = 0.127

seg 14 5000 nrho1 = 0.128

seg 15 4999 nrho1 = 0.130

seg 16 4999 nrho1 = 0.131

seg 17 4999 nrho1 = 0.132

seg 18 4999 nrho1 = 0.134

seg 19 4999 nrho1 = 0.135

seg 20 4999 nrho1 = 0.136

seg 21 4999 nrho1 = 0.138

seg 22 4999 nrho1 = 0.139

seg 23 4999 nrho1 = 0.141

seg 24 4999 nrho1 = 0.143

seg 25 4999 nrho1 = 0.145

seg 26 4999 nrho1 = 0.147

seg 27 4999 nrho1 = 0.149

seg 28 4999 nrho1 = 0.152

seg 29 4999 nrho1 = 0.155

seg 30 4984 nrho1 = 0.163

GLS Beta Pass

run 7 t= 0.0

GLS Residual Pass

run 7 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/EastDirection exists, deleting

Saving efficiency 7.5071

Testing Motion Correction Parameters

-1.36 -2.08 -1.90 1.12 -1.53 -0.31 0.07 0.12 0.22 1.06 -0.39 1.94 1.41 -0.79 0.07 0.12 -0.07 -0.12

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/NorthDirection exists, deleting

Saving efficiency 7.74585

Testing Motion Correction Parameters

0.09 -0.14 -0.39 -0.32 0.76 0.40 -0.01 -0.07 0.16 -0.16 -0.65 0.00 0.59 0.36 -0.01 -0.07 0.01 0.08

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/NorthSouth exists, deleting

Saving efficiency 5.17157

Testing Motion Correction Parameters

-0.72 -1.55 -1.86 0.32 -0.06 0.06 -0.09 -0.19 0.37 0.47 -0.91 1.17 1.86 -0.16 -0.09 -0.19 0.10 0.19

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/SouthDirection exists, deleting

Saving efficiency 7.90149

Testing Motion Correction Parameters

1.74 2.88 2.86 -1.20 1.01 0.26 0.15 0.23 -0.44 -1.30 0.73 -2.53 -2.43 0.80 0.15 0.23 -0.16 -0.24

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/WestDirection exists, deleting

Saving efficiency 9.82655

Testing Motion Correction Parameters

-0.25 -0.08 0.07 0.40 -0.41 -0.40 -0.27 -0.34 -0.02 0.30 0.39 0.18 -0.15 -0.41 -0.27 -0.34 0.27 0.34

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/WestEast exists, deleting

Saving efficiency 5.87919

Testing Motion Correction Parameters

0.51 1.01 1.12 -0.32 0.47 -0.01 -0.20 -0.28 -0.15 -0.35 0.52 -0.82 -0.95 0.18 -0.20 -0.28 0.20 0.28

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr009/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.000 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/Xtmp.mat

XCond = 61.9774 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.484824 (t=0.00132304)

2 -0.25 -0.268378 (t=0.00370903)

3 0 -0.0601149 (t=0.0041002)

4 0.25 0.135279 (t=0.00446539)

5 0.5 0.307195 (t=0.00483421)

AR1 Correction M: 0.0931041 1.25531

Computing contrast matrices

OLS Beta Pass

run 8 t= 0.0

reading data ... 0.514232

Global Mean 669.69

Global In-Mask Mean = 669.692 (876.682)

Rescale Target = 100

RescaleFactor = 0.149322

OLS Residual Pass

run 8 t= 0.0

reading data ... 0.519384

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.00128195 sec

seg 1 4999 nrho1 = 0.082

seg 2 4999 nrho1 = 0.094

seg 3 4999 nrho1 = 0.100

seg 4 4999 nrho1 = 0.105

seg 5 4999 nrho1 = 0.110

seg 6 4999 nrho1 = 0.113

seg 7 4999 nrho1 = 0.116

seg 8 4999 nrho1 = 0.118

seg 9 4999 nrho1 = 0.120

seg 10 4999 nrho1 = 0.122

seg 11 4999 nrho1 = 0.123

seg 12 4999 nrho1 = 0.125

seg 13 4999 nrho1 = 0.127

seg 14 4999 nrho1 = 0.128

seg 15 4999 nrho1 = 0.130

seg 16 4999 nrho1 = 0.131

seg 17 4999 nrho1 = 0.133

seg 18 4999 nrho1 = 0.134

seg 19 4999 nrho1 = 0.136

seg 20 4999 nrho1 = 0.137

seg 21 4999 nrho1 = 0.140

seg 22 4999 nrho1 = 0.141

seg 23 4999 nrho1 = 0.143

seg 24 4999 nrho1 = 0.145

seg 25 4999 nrho1 = 0.148

seg 26 4999 nrho1 = 0.150

seg 27 4999 nrho1 = 0.153

seg 28 4999 nrho1 = 0.156

seg 29 4999 nrho1 = 0.161

seg 30 4984 nrho1 = 0.168

GLS Beta Pass

run 8 t= 0.0

GLS Residual Pass

run 8 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/EastDirection exists, deleting

Saving efficiency 8.63898

Testing Motion Correction Parameters

0.03 0.56 -0.60 -0.05 -1.54 -0.43 -1.32 -1.28 -0.41 0.10 -0.53 -0.21 0.25 -0.05 -1.31 -1.28 1.31 1.27

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/NorthDirection exists, deleting

Saving efficiency 8.62758

Testing Motion Correction Parameters

-0.27 -1.52 1.94 0.78 -0.04 1.19 1.04 0.90 1.42 -0.04 1.95 1.39 -1.89 -0.31 1.04 0.89 -1.03 -0.89

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/NorthSouth exists, deleting

Saving efficiency 5.84006

Testing Motion Correction Parameters

-0.08 -1.03 1.26 0.51 -1.18 0.92 0.46 0.36 0.86 -0.12 1.12 0.91 -1.68 -0.18 0.46 0.36 -0.45 -0.35

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/SouthDirection exists, deleting

Saving efficiency 8.40369

Testing Motion Correction Parameters

-0.10 0.23 -0.24 -0.10 2.28 -0.29 0.07 0.11 -0.12 0.16 -0.13 -0.18 0.67 0.01 0.06 0.11 -0.07 -0.11

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/WestDirection exists, deleting

Saving efficiency 8.82888

Testing Motion Correction Parameters

0.38 0.23 -0.40 -0.48 -0.24 -0.12 0.04 0.05 -0.45 -0.23 -0.64 -0.59 0.31 0.36 0.04 0.05 -0.04 -0.05

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/WestEast exists, deleting

Saving efficiency 6.07489

Testing Motion Correction Parameters

0.19 -0.14 0.07 -0.22 0.53 0.15 0.73 0.72 -0.01 -0.21 -0.03 -0.16 0.02 0.24 0.73 0.72 -0.73 -0.72

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr010/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011

Excluding 4 points

parfiles condition id list: 1 2 3 4 5

Found 149955/163842 (91.5) voxels in mask 1

Creating Design Matrix

... creation time = 0.000 sec

DoMCFit = 1

ntptot = 120, nX = 15, DOF = 105

Saving X matrix to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/Xtmp.mat

XCond = 67.2393 (normalized)

Computing compensation for resdual AR1 bias

1 -0.5 -0.482103 (t=0.000481254)

2 -0.25 -0.268489 (t=0.00095232)

3 0 -0.0609972 (t=0.00129186)

4 0.25 0.133733 (t=0.00162726)

5 0.5 0.303554 (t=0.00196589)

AR1 Correction M: 0.0946469 1.26431

Computing contrast matrices

OLS Beta Pass

run 9 t= 0.0

reading data ... 0.509026

Global Mean 669.50

Global In-Mask Mean = 669.496 (870.252)

Rescale Target = 100

RescaleFactor = 0.149366

OLS Residual Pass

run 9 t= 0.0

reading data ... 0.521533

Saving rho1

Smoothing ACF

/Applications/freesurfer/7.1.1/bin/mris_fwhm --mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/mask.nii.gz --i /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/rho1mn.nii.gz --o /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /Users/ninakhatibi/Desktop/Project/Recon

fsaverage lh white

Number of vertices 163842

Number of faces 327680

Total area 65416.984375

GroupSurface 82219.960938

AvgVtxArea 0.399269

AvgVtxDist 0.721953

StdVtxDist 0.195470

Loading mask /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/mask.nii.gz

Found 149955 voxels in mask

Not Polynomial detrending

Smoothing input by fwhm=20.000000, gstd=8.493218, niters=294

Only smoothing, so saving and exiting now

Found 0 voxels with corrected AR1 > 0.90

Whitening

Computing whitening matrices

Alloc Sinv: 120 120 30 ... done t = 0.0011589 sec

seg 1 4999 nrho1 = 0.083

seg 2 4999 nrho1 = 0.096

seg 3 4999 nrho1 = 0.103

seg 4 4999 nrho1 = 0.109

seg 5 4999 nrho1 = 0.113

seg 6 4999 nrho1 = 0.116

seg 7 4999 nrho1 = 0.118

seg 8 4999 nrho1 = 0.120

seg 9 4999 nrho1 = 0.121

seg 10 4999 nrho1 = 0.123

seg 11 4999 nrho1 = 0.125

seg 12 4999 nrho1 = 0.126

seg 13 4999 nrho1 = 0.128

seg 14 4999 nrho1 = 0.130

seg 15 4999 nrho1 = 0.131

seg 16 4999 nrho1 = 0.133

seg 17 4999 nrho1 = 0.134

seg 18 4999 nrho1 = 0.136

seg 19 4999 nrho1 = 0.137

seg 20 4999 nrho1 = 0.138

seg 21 4999 nrho1 = 0.139

seg 22 4999 nrho1 = 0.141

seg 23 4999 nrho1 = 0.142

seg 24 4999 nrho1 = 0.144

seg 25 4999 nrho1 = 0.145

seg 26 4999 nrho1 = 0.147

seg 27 4999 nrho1 = 0.149

seg 28 4999 nrho1 = 0.151

seg 29 4999 nrho1 = 0.155

seg 30 4984 nrho1 = 0.164

GLS Beta Pass

run 9 t= 0.0

GLS Residual Pass

run 9 t= 0.0

Found 13887 zero-valued voxels

Computing contrasts

Starting contrasts

EastDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/EastDirection exists, deleting

Saving efficiency 8.37828

Testing Motion Correction Parameters

-0.43 -0.20 0.33 -0.04 -0.67 -0.07 0.25 0.07 2.13 0.56 0.88 0.05 -0.61 0.01 0.25 0.07 -0.23 -0.06

NorthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/NorthDirection exists, deleting

Saving efficiency 8.30357

Testing Motion Correction Parameters

-0.11 -0.10 -0.03 0.07 -0.04 -0.09 0.02 0.11 -0.52 0.11 0.08 0.08 0.02 -0.08 0.02 0.11 -0.03 -0.11

NorthSouth J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/NorthSouth exists, deleting

Saving efficiency 5.34095

Testing Motion Correction Parameters

-0.22 -0.11 0.19 -0.03 -0.41 -0.03 -0.19 -0.17 -0.14 0.28 0.45 0.02 -0.35 0.01 -0.19 -0.17 0.19 0.17

SouthDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/SouthDirection exists, deleting

Saving efficiency 7.74613

Testing Motion Correction Parameters

0.24 0.08 -0.39 0.12 0.69 -0.03 0.38 0.46 -0.18 -0.35 -0.69 0.04 0.68 -0.10 0.37 0.46 -0.38 -0.46

WestDirection J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/WestDirection exists, deleting

Saving efficiency 8.64267

Testing Motion Correction Parameters

0.26 0.22 0.08 -0.17 0.01 0.22 -0.87 -0.84 -0.67 -0.26 -0.16 -0.19 -0.08 0.18 -0.87 -0.84 0.86 0.82

WestEast J=1 -------------

/Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/WestEast exists, deleting

Saving efficiency 5.84935

Testing Motion Correction Parameters

0.45 0.27 -0.13 -0.07 0.37 0.18 -0.70 -0.51 -1.84 -0.53 -0.63 -0.15 0.26 0.10 -0.70 -0.51 0.68 0.49

Saving h.dat to /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr011/h.dat

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr012

Excluding 4 points

ERROR: fast_st2fir: two or more presentations are simultaneous

ERROR: creating FIR design matrix for Condition01

Dot indexing is not supported for variables of this type.

Error in flac_customize (line 354)

if(~isempty(flacnew.TFmtx))

Error in fast_selxavg3b (line 179)

flac = flac_customize(flac);

...

---

ERROR: fast_selxavg3() failed\n

Ninas-MacBook-Pro:FunctionalData ninakhatibi$

On Wed, Dec 23, 2020 at 9:27 PM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu> wrote: Can you send the full terminal output? Do all subjects have the same paradigm files?

On 12/21/2020 5:24 AM, Nina Khatibi wrote:

External Email - Use Caution

No, I have checked them all.

On Thu, Dec 17, 2020 at 6:05 PM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu> wrote: Are there presentations that are simultaneous?

On 12/12/2020 3:19 AM, Nina Khatibi wrote:

External Email - Use Caution

Hi, I'm using a functional analyse with selxavg3-sess, i have 25 subjects and each subject contains 15 runs, I've done plenty of analyses with different paradigm files, but now with a paradigm file of 5 conditions, I face an error on subject 22 run 12, which I can not solve.I wonder if you can help me. I'm using macbook pro 2018, macOS Mojave 10.14.6 and freesurfer-darwin-macOS-7.1.1-20200811-8b40551

outanadir = /Volumes/ADATA/FunctionalData/Subject22/bold/fsaverage5Con2Sec.lh/pr012

Excluding 4 points

ERROR: fast_st2fir: two or more presentations are simultaneous

ERROR: creating FIR design matrix for Condition01

Dot indexing is not supported for variables of this type.

Error in flac_customize (line 354)

if(~isempty(flacnew.TFmtx))

Error in fast_selxavg3b (line 179)

flac = flac_customize(flac);

...

---

ERROR: fast_selxavg3() failed\n

Regards,

Nina

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