Hi all, I am trying to run fReadQdec.m. My qdec.table.dat file is a tab delimited file. However when it reads to Qdec variable it reads it as N(# of subjects)X1 cell (discounting for all tabs and spaces). I tried debugging the code but it seems to me like it is just a simple read file in matlab. Does the qdec.table.dat file need to be in certain format?
-Sabin
yes, it has a certain format. Look at the examples on the wiki doug
On 02/18/2014 11:19 AM, sabin khadka wrote:
Hi all, I am trying to run fReadQdec.m. My qdec.table.dat file is a tab delimited file. However when it reads to Qdec variable it reads it as N(# of subjects)X1 cell (discounting for all tabs and spaces). I tried debugging the code but it seems to me like it is just a simple read file in matlab. Does the qdec.table.dat file need to be in certain format?
-Sabin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug, Thanks for the reply. Yeah I have my qdec.table.dat file in the same format as wiki says and in tab delimited format. But when I try to run fReadQdec it reads it as N(# of subjects)X1 cell (discounting for all tabs and spaces). I was assuming it would give me N X M(no of columns for each variable that I put in table).
-Sabin
On Tuesday, February 18, 2014 1:26 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
yes, it has a certain format. Look at the examples on the wiki doug
On 02/18/2014 11:19 AM, sabin khadka wrote:
Hi all, I am trying to run fReadQdec.m. My qdec.table.dat file is a tab delimited file. However when it reads to Qdec variable it reads it as N(# of subjects)X1 cell (discounting for all tabs and spaces). I tried debugging the code but it seems to me like it is just a simple read file in matlab. Does the qdec.table.dat file need to be in certain format?
-Sabin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
where did you get this m file from? I don't see it in our distribution.
On 02/18/2014 03:29 PM, sabin khadka wrote:
Hi Doug, Thanks for the reply. Yeah I have my qdec.table.dat file in the same format as wiki says and in tab delimited format. But when I try to run fReadQdec it reads it as N(# of subjects)X1 cell (discounting for all tabs and spaces). I was assuming it would give me N X M(no of columns for each variable that I put in table).
-Sabin
On Tuesday, February 18, 2014 1:26 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
yes, it has a certain format. Look at the examples on the wiki doug
On 02/18/2014 11:19 AM, sabin khadka wrote:
Hi all, I am trying to run fReadQdec.m. My qdec.table.dat file is a tab delimited file. However when it reads to Qdec variable it reads it as N(# of subjects)X1 cell (discounting for all tabs and spaces). I tried debugging the code but it seems to me like it is just a simple read file in matlab. Does the qdec.table.dat file need to be in certain
format?
-Sabin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Its under freesurfer/matlab/lme/Qdec. This is what is suggested to use while performing linear mixed effects models in freesurfer. http://surfer.nmr.mgh.harvard.edu/fswiki/LinearMixedEffectsModels
On Tuesday, February 18, 2014 3:35 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
where did you get this m file from? I don't see it in our distribution.
On 02/18/2014 03:29 PM, sabin khadka wrote:
Hi Doug, Thanks for the reply. Yeah I have my qdec.table.dat file in the same format as wiki says and in tab delimited format. But when I try to run fReadQdec it reads it as N(# of subjects)X1 cell (discounting for all tabs and spaces). I was assuming it would give me N X M(no of columns for each variable that I put in table).
-Sabin
On Tuesday, February 18, 2014 1:26 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
yes, it has a certain format. Look at the examples on the wiki doug
On 02/18/2014 11:19 AM, sabin khadka wrote:
Hi all, I am trying to run fReadQdec.m. My qdec.table.dat file is a tab delimited file. However when it reads to Qdec variable it reads it as N(# of subjects)X1 cell (discounting for all tabs and spaces). I tried debugging the code but it seems to me like it is just a simple read file in matlab. Does the qdec.table.dat file need to be in certain
format?
-Sabin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Sabin
fReadQdec requires space-delimited format for the colums of your qdec not tabs. It's easy to modify the script so it can work with tab-delimited format thoug.
Best -Jorge
Sent from Yahoo Mail on Android
freesurfer@nmr.mgh.harvard.edu
-
Douglas N Greve -
jbernal0019＠yahoo.es -
sabin khadka