Maybe I've misunderstood. In http://surfer.nmr.mgh.harvard.edu/fswiki/RecommendedReconstruction , after autorecon2 it says to check white and pial surfaces before running autorecon3. The linked tutorials on how to do WM, Pial and Final surfaces edits, does not mention checking the aseg as far as I can see. Also, to express myself more clearly: I'm thinking of the labeling of the subcortical structures (thalamus, putamen, etc.). Is there something I'm missing here? - Martin

Allison Stevens wrote:

It should be part of the workflow. Can you show me where it was not listed?

On May 13, 2010, at 7:58 AM, Martin Ystad martin.ystad@biomed.uib.no wrote:

...

Hi, I noticed that routinely checking the subcortical segmentation (aseg.mgz) is not part of the Recommended Reconstruction Work Flow. Is this because the subcortical segmentation is highly accurate, or because manual intervention in the aseg is not recommended anyway?

Thanks, Martin Ystad PhD-student University of Bergen, Norway _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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