Hi, I copied the new version of the programs
mktemplate-sess surfsmooth-sess stc-sess mkbrainmask-sess mc-sess
When i try to run preproc-sess -s LD-functional -fwhm 5 again, I get the following error,
-------------------------------------------------------------- preproc-sess logfile is log/preproc-sess.log -------------------------------------------------------------- instem f mc 1 f fmc stc 0 fmc sm 1 fmc fmcsm5 mask 1 brain LD-functional MC ----------------------------- Tue Jul 22 09:25:08 EDT 2008 /Users/balajigoparaju/Desktop/subjectdata mc-sess -fstem f -fmcstem fmc -s LD-functional -d /Users/balajigoparaju/Desktop/subjectdata -fsd bold -new -update -no-inorm ---------------------------------------- /Applications/freesurfer/fsfast/bin/mc-sess: line 1: {rtf1macansicpg10000cocoartf824cocoasubrtf480: command not found /Applications/freesurfer/fsfast/bin/mc-sess: line 2: syntax error near unexpected token `}' /Applications/freesurfer/fsfast/bin/mc-sess: line 2: `{\fonttbl\f0\fswiss\fcharset77 Helvetica;}' ERROR: mc-sess failed
And then i tried changing the mc-sess.backup file back to the mc-sess (Using the older version of mc-sess), and then the mc-sess and spatialsmooth-sess part of the preproc-sess program worked fine, but i get a similar error for the brainmask-sess program.
Tue Jul 22 09:19:12 EDT 2008 /Users/balajigoparaju/Desktop/subjectdata mkbrainmask-sess -maskstem brain -fsd bold -s LD-functional -d /Users/balajigopa raju/Desktop/subjectdata -update ---------------------------------------- /Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 1: {rtf1macansicpg100 00cocoartf824cocoasubrtf480: command not found /Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 2: syntax error near unexpected token `}' /Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 2: `{\fonttbl\f0\fswi ss\fcharset77 Helvetica;}' ERROR: mkbrainmask-sess failed
Thank you for any help.
That's strange. Is the file corrupted? Can you send the mc-sess back to me?
Balaji Goparaju wrote:
Hi,
I copied the new version of the programs
mktemplate-sess surfsmooth-sess stc-sess mkbrainmask-sess mc-sess
When i try to run preproc-sess -s LD-functional -fwhm 5 again, I get the following error,
preproc-sess logfile is log/preproc-sess.log
instem f mc 1 f fmc stc 0 fmc sm 1 fmc fmcsm5 mask 1 brain LD-functional MC ----------------------------- Tue Jul 22 09:25:08 EDT 2008 /Users/balajigoparaju/Desktop/subjectdata mc-sess -fstem f -fmcstem fmc -s LD-functional -d /Users/balajigoparaju/Desktop/subjectdata -fsd bold -new -update -no-inorm
/Applications/freesurfer/fsfast/bin/mc-sess: line 1: {rtf1macansicpg10000cocoartf824cocoasubrtf480: command not found /Applications/freesurfer/fsfast/bin/mc-sess: line 2: syntax error near unexpected token `}' /Applications/freesurfer/fsfast/bin/mc-sess: line 2: `{\fonttbl\f0\fswiss\fcharset77 Helvetica;}' ERROR: mc-sess failed
And then i tried changing the mc-sess.backup file back to the mc-sess (Using the older version of mc-sess), and then the mc-sess and spatialsmooth-sess part of the preproc-sess program worked fine, but i get a similar error for the brainmask-sess program.
Tue Jul 22 09:19:12 EDT 2008 /Users/balajigoparaju/Desktop/subjectdata mkbrainmask-sess -maskstem brain -fsd bold -s LD-functional -d /Users/balajigopa raju/Desktop/subjectdata -update
/Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 1: {rtf1macansicpg100 00cocoartf824cocoasubrtf480: command not found /Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 2: syntax error near unexpected token `}' /Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 2: `{\fonttbl\f0\fswi ss\fcharset77 Helvetica;}' ERROR: mkbrainmask-sess failed
Thank you for any help.
freesurfer@nmr.mgh.harvard.edu