Hi,
I'm responding to this archived email: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/023599.html Is it possible to run recon-all with the switch -nowmsa to get rid of the white matter segmentation analysis?
Thanks!
Mary Ellen Koran MD/PhD Candidate, MSTP Thornton-Wells Lab, Center for Human Genetics Research Vanderbilt University School of Medicine Duke University, Class of 2009, BSE Cell: 919.943.5114
Yes, you should be able to. doug
On 08/10/2012 04:58 PM, Mary Ellen Koran wrote:
Hi,
I'm responding to this archived email: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/023599.html
Is it possible to run recon-all with the switch -nowmsa to get rid of the white matter segmentation analysis?
Thanks!
Mary Ellen Koran MD/PhD Candidate, MSTP Thornton-Wells Lab, Center for Human Genetics Research Vanderbilt University School of Medicine Duke University, Class of 2009, BSE Cell: 919.943.5114 <tel:919.943.5114>
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Mary Ellen
yes, that will remove the wmsas. It won't actually skip any steps in the analysis, but it will replace every wmsa label with the 2nd most probable one.
cheers Bruce
On Fri, 10 Aug 2012, Mary Ellen Koran wrote:
Hi, I'm responding to this archived email: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/023599.html Is it possible to run recon-all with the switch -nowmsa to get rid of the white matter segmentation analysis?
Thanks!
Mary Ellen Koran MD/PhD Candidate, MSTPThornton-Wells Lab, Center for Human Genetics Research Vanderbilt University School of Medicine Duke University, Class of 2009, BSE Cell: 919.943.5114
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Douglas N Greve -
Mary Ellen Koran