Hi Mary Ellen
yes, that will remove the wmsas. It won't actually skip any steps in the analysis, but it will replace every wmsa label with the 2nd most probable one.
cheers Bruce
On Fri, 10 Aug 2012, Mary Ellen Koran wrote:
Hi, I'm responding to this archived email: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-May/023599.html Is it possible to run recon-all with the switch -nowmsa to get rid of the white matter segmentation analysis?
Thanks!
Mary Ellen Koran MD/PhD Candidate, MSTPThornton-Wells Lab, Center for Human Genetics Research Vanderbilt University School of Medicine Duke University, Class of 2009, BSE Cell: 919.943.5114