wow, we haven't seen that happen. Does the recon-all.log from the parallel machine have any clues as to why it is empy? On Mon, 26 Oct 2015, Anna I. Garcia Diaz wrote:

Hi Bruce, Thanks for the reply. The talairach.xfm file generated by the palarellizing machine is empty; it looks as follows:

Talairach.xfm file:

MNI Transform File

% avi2talxfm

Transform_Type = Linear;

Linear_Transform =

However, the talaraich.xfm file generated by the non-paralellizing machine is the following:

MNI Transform File

% avi2talxfm

Transform_Type = Linear;

Linear_Transform =

1.088816 -0.036409 -0.059575 1.880753

0.047590 1.030018 0.245325 -4.493217

0.029937 -0.211744 1.231518 94.663368;

Anna

On Thu, Oct 22, 2015 at 6:00 PM, freesurfer-request@nmr.mgh.harvard.edu wrote: Send Freesurfer mailing list submissions to         freesurfer@nmr.mgh.harvard.edu

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     1.  normalization of hippocampal volume (geschwind2013)
     2. Postdoctoral Opportunity: Multimodal MRI registration   
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        analysis (Frederic Andersson)
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  dataset
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     4. Re: Sulcal depth units (Bruce Fischl)
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  Fischl)
     6. Re: How to compute the measures on the average brain?
        (Bruce Fischl)
     7. Re: Talairach_afd error (Bruce Fischl)
     8. Re: How to compute the measures on the average brain?
        (Douglas N Greve)
     9. Re: normalization of hippocampal volume (Douglas N Greve)
    10. Re: per analysis with covariates (Douglas N Greve)


  ----------------------------------------------------------------------

  Message: 1
  Date: Thu, 22 Oct 2015 17:18:21 +0900
  From: geschwind2013 <neurofree@gmail.com>
  Subject: [Freesurfer]  normalization of hippocampal volume
  To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
  Message-ID: <27AF7ECA-E1B4-4337-BB2C-4CBE4109F342@gmail.com>
  Content-Type: text/plain; charset=euc-kr

  Hi, FS Experts,

  I?m using version 5.3 and have performed hippo-subfields
  analysis.

  To perform the statistics, shall I get the normalized volumes of
  each hippo-subfields?
  or just to do correction for ICV is enough ?

  thanks..

  Hyon


  ------------------------------

  Message: 2
  Date: Thu, 22 Oct 2015 15:30:14 +0200
  From: Frederic Andersson <andersson@univ-tours.fr>
  Subject: [Freesurfer] Postdoctoral Opportunity: Multimodal MRI
          registration    and analysis
  To: freesurfer@nmr.mgh.harvard.edu
  Message-ID: <6E3A85F5-C942-49D0-BBE0-4C51C4E8EC27@univ-tours.fr>
  Content-Type: text/plain; charset="utf-8"

  Postdoctoral Opportunity: Multimodal MRI registration and
  analysis

  Context and methodology
  This postdoctoral position will focus on the registration of
  ex-vivo onto in-vivo MR data. Based on some recent advances
  extending the combined volume and surface registration,
  efficient approaches can be provided for dealing with this
  issue. However, these methods need to be validated and several
  open theoretical questions are related to this problem and will
  be investigated during this postdoctoral work. The theoretical
  results obtained will be tested and used on real human data in a
  larger framework aiming at tractography validation (French
  National Research Agency Grant ANR 2014, collaborative study
  Inserm U930, Universit? de Tours, Neurospin and Martinos
  Center).

  Applicant profile
  Candidates should have a strong background in image registration
  and MR imaging, a good publication record, and strong experience
  in c++ and matlab coding. Proficiency in English is required, as
  well as scientific writing skills.
  Applicants should send a CV, including list of publications and
  a description of previous research experience, as well as the
  names and emails of two academic referees to: Clovis Tauber
  (clovis.tauber@univ-tours.fr
  <mailto:clovis.tauber@univ-tours.fr>) and Christophe Destrieux
  (christophe.destrieux@univtours.fr
  <mailto:christophe.destrieux@univtours.fr> )

  Conditions
  Starting date: January 2016 (adjustable)
  Contract: 2 years
  Location: Imaging and Brain unit, INSERM U930, Tours.
  Salary: related to experience

  References
  G.M. Postelnicu, L. Z?llei, B. Fischl: Combined Volumetric and
  Surface Registration, IEEE Transactions on Medical Imaging 28
  (4), April 2009, p. 508--522
  Zemmoura I, Serres B, Andersson F, Barrantin L, Tauber C,
  Filipiak I, Cottier JP, Venturini G and Destrieux C 2014
  FIBRASCAN: a novel method for 3D white matter tract
  reconstruction in MR space from cadaveric dissection Neuroimage
  103 106?118
  Serres B, Zemmoura I, Andersson F, Tauber C, Destrieux C and
  Venturini G 2013 Brain Virtual Dissection and White Matter 3D
  Visualization Stud. Health Technol. Inform. 184 392--396