Hi Darren,

did this just start for you? The 6th parm isn't used, but is reserved for future stuff and should be in the file (it's in the current version)

Bruce

On Wed, 29 Nov 2006, Darren Weber wrote:

Why do we see the error below from CTABread? Is it important to have 6 parameters in FreeSurferColorLUT.txt?

Thanks, Darren

mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --ctab-default --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --subject ucsf_disc08

Using defalt ctab /home/dweber/freesurfer/home/FreeSurferColorLUT.txt atlas_icv = 1.3356e+06 Loading mri/aseg.mgz Loading mri/norm.mgz Loading mri/norm.mgz Loading mri/brainmask.mgz # nbrainmaskvoxels 1453903 # brainmaskvolume 1453903.0 # nbrainsegvoxels 1047830 # brainsegvolume 1047830.0 Voxel Volume is 1 mm^3 Generating list of segmentation ids CTABread(/home/dweber/freesurfer/home/FreeSurferColorLUT.txt): could not scan 6 parms from line 1100 ctx-lh-Unknown 0 0 0 (403) CTABread(/home/dweber/freesurfer/home/FreeSurferColorLUT.txt): could not scan 6 parms from line 1101 ctx-lh-Corpus_callosum 50 50 50 (403) ....

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