Why do we see the error below from CTABread? Is it important to have 6 parameters in FreeSurferColorLUT.txt?
Thanks, Darren
mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --ctab-default --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --subject ucsf_disc08
Using defalt ctab /home/dweber/freesurfer/home/FreeSurferColorLUT.txt atlas_icv = 1.3356e+06 Loading mri/aseg.mgz Loading mri/norm.mgz Loading mri/norm.mgz Loading mri/brainmask.mgz # nbrainmaskvoxels 1453903 # brainmaskvolume 1453903.0 # nbrainsegvoxels 1047830 # brainsegvolume 1047830.0 Voxel Volume is 1 mm^3 Generating list of segmentation ids CTABread(/home/dweber/freesurfer/home/FreeSurferColorLUT.txt): could not scan 6 parms from line 1100 ctx-lh-Unknown 0 0 0 (403) CTABread(/home/dweber/freesurfer/home/FreeSurferColorLUT.txt): could not scan 6 parms from line 1101 ctx-lh-Corpus_callosum 50 50 50 (403) ....