Thanks Douglas. We tried that . . . The registration matrix that we need is not created. Here is the output log file (attached). I am a bit new to this so I am hoping it has the information you need. After taking a quick glance at the log file, we noticed there are errors in the log file.
Step by step, this is what we did after we ran recon-all: Reg-feat2anat ‹feat OurFeatDirectory.feat ‹subject P209
When we open the folder experiment.feat/reg/freesurfer, there is no anat2exf.register.dat file. However, there is a file called: anat2exf.register.dat.init.
Thanks, Sherryse
It is looking for subject P143 in /usr/local/freesurfer/subjects Does it exist? If so, does /usr/local/freesurfer/subjects/P143/mri/brainmask.mgz exist?
On 05/07/2014 01:59 PM, Sherryse Corrow wrote:
Thanks Douglas. We tried that . . . The registration matrix that we need is not created. Here is the output log file (attached). I am a bit new to this so I am hoping it has the information you need. After taking a quick glance at the log file, we noticed there are errors in the log file.
Step by step, this is what we did after we ran recon-all: Reg-feat2anat ‹feat OurFeatDirectory.feat ‹subject P209
When we open the folder experiment.feat/reg/freesurfer, there is no anat2exf.register.dat file. However, there is a file called: anat2exf.register.dat.init.
Thanks, Sherryse
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Douglas,
Okay, trying again.
Problem: When we run the command line below, and then open the folder experiment.feat/reg/freesurfer, there is no anat2exf.register.dat file. However, there is a file called: anat2exf.register.dat.init.
Command Line: Reg-feat2anat -feat OurFeatDirectory.feat -subject P143
Terminal Output: There is no terminal output. No error of any kind.
Log File: Attached.
Thanks, Sherryse
On 5/18/14, 3:22 PM, "Sherryse Corrow" sherryse.corrow@eyecarecentre.org wrote:
Hi Douglas,
Okay, trying again.
Problem: When we run the command line below, and then open the folder experiment.feat/reg/freesurfer, there is no anat2exf.register.dat file. However, there is a file called: anat2exf.register.dat.init.
Command Line: Reg-feat2anat -feat OurFeatDirectory.feat -subject P143
Terminal Output: There is no terminal output. No error of any kind.
Log File: Attached.
Thanks, Sherryse -- Sherryse Corrow, Ph.D. / Postdoctoral Fellow Human Vision and Eye Movement Lab Department of Ophthalmology & Visual Sciences UBC/VGH Eye Care Centre 360A-2550 Willow Street Vancouver, BC, V5Z 3N9 Tel: 604-875-4111 ext 67672
Cell: 604-315-6717
sherryse.corrow@eyecarecentre.org
On 5/7/14, 10:59 AM, "Sherryse Corrow" sherryse.corrow@eyecarecentre.org wrote:
Thanks Douglas. We tried that . . . The registration matrix that we need is not created. Here is the output log file (attached). I am a bit new to this so I am hoping it has the information you need. After taking a quick glance at the log file, we noticed there are errors in the log file.
Step by step, this is what we did after we ran recon-all: Reg-feat2anat ‹feat OurFeatDirectory.feat ‹subject P209
When we open the folder experiment.feat/reg/freesurfer, there is no anat2exf.register.dat file. However, there is a file called: anat2exf.register.dat.init.
Thanks, Sherryse -- Sherryse Corrow, Ph.D. / Postdoctoral Fellow Human Vision and Eye Movement Lab Department of Ophthalmology & Visual Sciences UBC/VGH Eye Care Centre 360A-2550 Willow Street Vancouver, BC, V5Z 3N9 Tel: 604-875-4111 ext 67672
Cell: 604-315-6717
sherryse.corrow@eyecarecentre.org
On 5/6/14, 9:00 AM, "freesurfer-request@nmr.mgh.harvard.edu" freesurfer-request@nmr.mgh.harvard.edu wrote:
Re: Viewing functional data on the inflated brain
freesurfer@nmr.mgh.harvard.edu
-
Douglas N Greve -
Sherryse Corrow