It is looking for subject P143 in /usr/local/freesurfer/subjects Does it exist? If so, does /usr/local/freesurfer/subjects/P143/mri/brainmask.mgz exist?
On 05/07/2014 01:59 PM, Sherryse Corrow wrote:
Thanks Douglas. We tried that . . . The registration matrix that we need is not created. Here is the output log file (attached). I am a bit new to this so I am hoping it has the information you need. After taking a quick glance at the log file, we noticed there are errors in the log file.
Step by step, this is what we did after we ran recon-all: Reg-feat2anat ‹feat OurFeatDirectory.feat ‹subject P209
When we open the folder experiment.feat/reg/freesurfer, there is no anat2exf.register.dat file. However, there is a file called: anat2exf.register.dat.init.
Thanks, Sherryse
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