Use this version ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.linux doug

On 11/08/2012 10:01 PM, Zheng Hui wrote:

Hi Doug,

After updating the mri_segstats, all our recon-all encounter errors as follow log suggest. Please advice a work around.

Thank you, Zheng Hui

mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.4020/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.4020/sum.junk --avgwf ./tmp.mri_nu_correct.mni.4020/input.mean.dat

$Id: mri_segstats.c,v 1.86 2012/07/16 14:39:07 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.4020/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.4020/sum.junk --avgwf ./tmp.mri_nu_correct.mni.4020/input.mean.dat sysname Linux hostname compute-08-00.cbdc.rhhpc.cluster machine x86_64 user gmszh UseRobust 0 Loading ./tmp.mri_nu_correct.mni.4020/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 0 0

Reporting on 0 segmentations Computing spatial average of each frame

Writing to ./tmp.mri_nu_correct.mni.4020/input.mean.dat mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.4020/ones.mgz --i ./tmp.mri_nu_correct.mni.4020/nu2.mnc --sum ./tmp.mri_nu_correct.mni.4020/sum.junk --avgwf ./tmp.mri_nu_correct.mni.4020/output.mean.dat

$Id: mri_segstats.c,v 1.86 2012/07/16 14:39:07 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.4020/ones.mgz --i ./tmp.mri_nu_correct.mni.4020/nu2.mnc --sum ./tmp.mri_nu_correct.mni.4020/sum.junk --avgwf ./tmp.mri_nu_correct.mni.4020/output.mean.dat sysname Linux hostname compute-08-00.cbdc.rhhpc.cluster machine x86_64 user gmszh UseRobust 0 Loading ./tmp.mri_nu_correct.mni.4020/ones.mgz Loading ./tmp.mri_nu_correct.mni.4020/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 0 0

Reporting on 0 segmentations Computing spatial average of each frame

Writing to ./tmp.mri_nu_correct.mni.4020/output.mean.dat (standard_in) 1: parse error mris_calc -o ./tmp.mri_nu_correct.mni.4020/nu2.mnc ./tmp.mri_nu_correct.mni.4020/nu2.mnc mul Linux compute-08-00.cbdc.rhhpc.cluster 2.6.18-164.el5 #1 SMP Tue Aug 18 15:51:48 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s SS193D_fs exited with ERRORS at Thu Nov 8 16:50:04 SGT 2012

For more details, see the log file /data/research1/cnl/Experiments/SLABS/FS/mempr/SS193D_fs/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting