Can you send the log file? doug

On 11/01/2012 08:04 PM, Angie Morales wrote:

Thanks for the reply. Unfortunately, disk space does not seem to be the problem.

On Thu, Nov 1, 2012 at 1:43 PM, Angie Morales <ammorales@gmail.com mailto:ammorales@gmail.com> wrote:

I'm using Freesurfer version 5.1.0 and recon-all keeps exiting
with errors during the intensity correction step. The error reads:

Writing to ./tmp.mri_nu_correct.mni.24988/output.mean.dat
(standard_in) 1: syntax error
mris_calc -o ./tmp.mri_nu_correct.mni.24988/nu2.mnc
./tmp.mri_nu_correct.mni.24988/nu2.mnc mul
Linux funcgrid3 3.1.10-1.16-desktop #1 SMP PREEMPT Wed Jun 27
05:21:40 UTC 2012 (d016078) x86_64 x86_64 x86_64 GNU/Linux

recon-all -s 402_1 exited with ERRORS at Thu Nov  1 13:19:28 PDT 2012

Any ideas about what might be going wrong?

Thanks,
Angie

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Oh, sorry, you have an updated but buggy version of mri_segstats. Try the version here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.linux

doug

On 11/09/2012 12:44 PM, Angie Morales wrote:

Here is my log file. Thanks again.

On Thu, Nov 1, 2012 at 5:04 PM, Angie Morales <ammorales@gmail.com mailto:ammorales@gmail.com> wrote:

Thanks for the reply. Unfortunately, disk space does not seem to
be the problem.


On Thu, Nov 1, 2012 at 1:43 PM, Angie Morales <ammorales@gmail.com
<mailto:ammorales@gmail.com>> wrote:

    I'm using Freesurfer version 5.1.0 and recon-all keeps exiting
    with errors during the intensity correction step. The error
    reads:

    Writing to ./tmp.mri_nu_correct.mni.24988/output.mean.dat
    (standard_in) 1: syntax error
    mris_calc -o ./tmp.mri_nu_correct.mni.24988/nu2.mnc
    ./tmp.mri_nu_correct.mni.24988/nu2.mnc mul
    Linux funcgrid3 3.1.10-1.16-desktop #1 SMP PREEMPT Wed Jun 27
    05:21:40 UTC 2012 (d016078) x86_64 x86_64 x86_64 GNU/Linux

    recon-all -s 402_1 exited with ERRORS at Thu Nov  1 13:19:28
    PDT 2012

    Any ideas about what might be going wrong?

    Thanks,
    Angie

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer