Hi Talis

have you visually inspected the talairach transform? How did you get the volume into nifti format? Check the 001.mgz in tkmedit and make sure that it has the directions correct (e.g. coronal is really coronal, etc..)

cheers Bruce

On Tue, 28 Dec 2010, Tali Swisher wrote:

Hello,

Below I've copied the information for 1 case that has repeatedly given me the same error; however, I'm receiving the same error for the entire caselist (which has over 30 cases). Any help would be very much appreciated!

Thanks, Tali

[bugr output]* FREESURFER_HOME: /projects/schiz/software/ freesurfer4.2.0_64/

Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v4.2.0

RedHat release: Fedora release 11 (Leonidas)

Kernel info: Linux 2.6.30.10-105.2.23.fc11.x86_64 x86_64

*[error log]* #@# Talairach Failure Detection Wed Dec 22 12:48:09 EST 2010 /home/pnlstaff/freesurfer/subjects/casen1623/mri

talairach_afd -T 0.005 -xfm transforms/talairach.xfm

ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux compute-3-9.local 2.6.9-34.ELsmp #1 SMP Fri Feb 24 16:56:28 EST 2006 x86_64 x86_64 x86_64 GNU/Linux

recon-all exited with ERRORS at Wed Dec 22 12:48:09 EST 2010

[program]* recon-all -i nifti-files/n1623-t1w-realign-masked.nii.gz -autorecon1 -noskullstrip -subjid casen1623 && cp subjects/casen1623/mri/T1.mgz subjects/casen1623/mri/brainmask.mgz && recon-all -autorecon2 -subjid casen1623 && recon-all -autorecon3 -subjid casen1623