Hello all,
I am in the middle of a FreeSurfer v.6.0 longitudinal analysis, running on the Martinos cluster, and I received an error today during the (-base) template creation step regarding a file that the pipeline calls upon:
GCAread(/usr/local/freesurfer/stable6/average/RB_all_2016-02-11.gca): could not open file
I noticed that permissions access to this file are limited at present to the greve group and that the file was last modified earlier today. I'm unfamiliar with this component's functionality, but am assuming access to it is necessary for template creation. Would this simply be the issue?
Preemptive thanks, Brendan Grafe
----------------------------- Brendan P. Grafe MSc Clinical Research Assistant Berenson-Allen Center for Noninvasive Brain Stimulation Beth Israel Deaconess Medical Center 330 Brookline Avenue Boston, MA 02215 Tel: 617-667-0256 Fax: 617-975-5322
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ok, try now
On 02/16/2016 04:38 PM, Grafe,Brendan P. (BIDMC - Neurology) wrote:
Hello all,
I am in the middle of a FreeSurfer v.6.0 longitudinal analysis, running on the Martinos cluster, and I received an error today during the (–base) template creation step regarding a file that the pipeline calls upon:
GCAread(/usr/local/freesurfer/stable6/average/RB_all_2016-02-11.gca): could not open file
I noticed that permissions access to this file are limited at present to the greve group and that the file was last modified earlier today. I’m unfamiliar with this component’s functionality, but am assuming access to it is necessary for template creation. Would this simply be the issue?
Preemptive thanks,
Brendan Grafe
Brendan P. Grafe MSc
Clinical Research Assistant
Berenson-Allen Center for Noninvasive Brain Stimulation
Beth Israel Deaconess Medical Center
330 Brookline Avenue
Boston, MA 02215
Tel: 617-667-0256
Fax: 617-975-5322
This message is intended for the use of the person(s) to whom it may be addressed. It may contain information that is privileged, confidential, or otherwise protected from disclosure under applicable law. If you are not the intended recipient, any dissemination, distribution, copying, or use of this information is prohibited. If you have received this message in error, please permanently delete it and immediately notify the sender. Thank you.
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Grafe,Brendan P. (BIDMC - Neurology)