Hi everyone, I'm getting the follow error and it's jus started happening after updating Xquartz.. any ideas what I can do? Also, i dont have a .debug_tkmedit file, when tkmedit was running normally the first line would say could not create debug file.
Many thanks, Hugh
ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to freesurfer@nmr.mgh.harvard.edu : : Now exiting...
i've tried reinstalling xquartz (this is on a mac by the way) and now I'm getting this error when trying to run tkmedit, any ideas would be hugely appreciated!
Thanks, Hugh
Couldn't create output file .xdebug_tkmeditGLUT: Fatal Error in tkmedit.bin: could not open display: /tmp/launch-ivIjwf/org.macosforge.xquartz:0
On 14 July 2014 09:41, Hugh Pemberton hughpemberton1@gmail.com wrote:
Hi everyone, I'm getting the follow error and it's jus started happening after updating Xquartz.. any ideas what I can do? Also, i dont have a .debug_tkmedit file, when tkmedit was running normally the first line would say could not create debug file.
Many thanks, Hugh
ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to freesurfer@nmr.mgh.harvard.edu : : Now exiting...
Another problem now is that my terminal is not recognising the freesurfer folder.. it's just saying that the directory doesn't exist even though i can see and interact with all the files through the finder.. any ideas what might have happened/how I can check for the problem would be much appreciated.
Many thanks, Hugh
On 14 July 2014 15:25, Hugh Pemberton hughpemberton1@gmail.com wrote:
i've tried reinstalling xquartz (this is on a mac by the way) and now I'm getting this error when trying to run tkmedit, any ideas would be hugely appreciated!
Thanks, Hugh
Couldn't create output file .xdebug_tkmeditGLUT: Fatal Error in tkmedit.bin: could not open display: /tmp/launch-ivIjwf/org.macosforge.xquartz:0
On 14 July 2014 09:41, Hugh Pemberton hughpemberton1@gmail.com wrote:
Hi everyone, I'm getting the follow error and it's jus started happening after updating Xquartz.. any ideas what I can do? Also, i dont have a .debug_tkmedit file, when tkmedit was running normally the first line would say could not create debug file.
Many thanks, Hugh
ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to freesurfer@nmr.mgh.harvard.edu : : Now exiting...
Hugh,
Can you provide some examples of the problem with the terminal having issues detecting the FreeSurfer folder (ls pwd etc.)? And describe where the folder is installed on your computer in the Finder?
Thanks, D
On Mon, Jul 14, 2014 at 12:54 PM, Hugh Pemberton hughpemberton1@gmail.com wrote:
Another problem now is that my terminal is not recognising the freesurfer folder.. it's just saying that the directory doesn't exist even though i can see and interact with all the files through the finder.. any ideas what might have happened/how I can check for the problem would be much appreciated.
Many thanks, Hugh
On 14 July 2014 15:25, Hugh Pemberton hughpemberton1@gmail.com wrote:
i've tried reinstalling xquartz (this is on a mac by the way) and now I'm getting this error when trying to run tkmedit, any ideas would be hugely appreciated!
Thanks, Hugh
Couldn't create output file .xdebug_tkmeditGLUT: Fatal Error in tkmedit.bin: could not open display: /tmp/launch-ivIjwf/org.macosforge.xquartz:0
On 14 July 2014 09:41, Hugh Pemberton hughpemberton1@gmail.com wrote:
Hi everyone, I'm getting the follow error and it's jus started happening after updating Xquartz.. any ideas what I can do? Also, i dont have a .debug_tkmedit file, when tkmedit was running normally the first line would say could not create debug file.
Many thanks, Hugh
ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to freesurfer@nmr.mgh.harvard.edu : : Now exiting...
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hugh,
it looks like the new XQuartz v2.7.6 is breaking tkmedit, and we don't know why. You will have to revert to using v2.7.5:
http://xquartz.macosforge.org/downloads/SL/XQuartz-2.7.5.dmg
Nick
On Mon, 2014-07-14 at 15:25 +0100, Hugh Pemberton wrote:
i've tried reinstalling xquartz (this is on a mac by the way) and now I'm getting this error when trying to run tkmedit, any ideas would be hugely appreciated!
Thanks, Hugh
Couldn't create output file .xdebug_tkmeditGLUT: Fatal Error in tkmedit.bin: could not open display: /tmp/launch-ivIjwf/org.macosforge.xquartz:0
On 14 July 2014 09:41, Hugh Pemberton hughpemberton1@gmail.com wrote: Hi everyone, I'm getting the follow error and it's jus started happening after updating Xquartz.. any ideas what I can do? Also, i dont have a .debug_tkmedit file, when tkmedit was running normally the first line would say could not create debug file.
Many thanks, Hugh ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to freesurfer@nmr.mgh.harvard.edu : : Now exiting...
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The XQuartz upgrade from v2.7.5 to v2.7.6 broke some of the FreeSurfer GUIs. Please reinstall XQuartz v2.7.5. It can be downloaded from this page (http://xquartz.macosforge.org/trac/wiki/Releases).
On 07/14/2014 04:41 AM, Hugh Pemberton wrote:
Hi everyone, I'm getting the follow error and it's jus started happening after updating Xquartz.. any ideas what I can do? Also, i dont have a .debug_tkmedit file, when tkmedit was running normally the first line would say could not create debug file.
Many thanks, Hugh
ERROR: A segfault has occurred. This is not your fault, : but is most likely an unrecoverable error and has : made the program unstable. : : Please send the contents of the file .xdebug_tkmedit : that should be in this directory to freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu : : Now exiting...
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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dgw -
Hugh Pemberton -
Nick Schmansky, MGH -
Z K