Hi there:

As of now, FreeSurfer does not parcellate the cerebellar vermis. It gives you 4 measurements of the cerebellum (Left total, left WM, Right total and right WM).

There is a toolbox called SUIT that works within SPM 8 that can accomplish this for you. See details at the website below:

http://www.icn.ucl.ac.uk/motorcontrol/imaging/suit.htm

best,

Alan Francis

On Tue, Jul 15, 2014 at 8:53 AM, Sarosh, Cyrus csarosh@med.umich.edu wrote:

We are interested in using the Cerebellar vermis for an analysis with our PET data. Is the cerebellar vermis segmented during the FreeSurfer pipeline analysis? If it is, which file is it located in or how can I export a nifti file containing this segmentation?

Thanks,

Cyrus Sarosh

[image: Description: Description: Description: Description: Description: Description: Description: cid:image002.png@01CC3BB7.F8D9A990]

Research Technician Senior

Department of Radiology

Functional Neuroimaging, Cognitive and Mobility Laboratory

---

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.