Hi, I have a problem unpacking raw files for data processing from the scanner from a read only cd (compact disk). When I try to unpack from /media/disk no such directory exits, yet I can cd into this directory. If I make a work directory for raw_data and cp from this read only disk I get an error that the .dat files cannot be read. Below is the unpacking command. Are you familiar with this?
unpacksdcmdir -src ./ -targ ./ -scanonly scan.dat
I am using the above command in (nmr-std-env)
*note: if I used the unpack command of the files cp from the disk, I get the log file and the command initates reading the dicom files although I have the .dat error. Ideally I'd rather unpack directly from the CD.
Has anyone had this error or trouble unpacking files from CD?
Thank you! Tara
Tara, I'm having problems figuring out what you are doing and what is going wrong. Can you look at the following web site
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting for instructions on how best to report a bug?
As a start, you should do is to cd into the directory where all the dicom files are on the cd, then run the command below (but you'll need to specify a different target and scan.dat file because the cd is readonly.
doug
tsporko@nmr.mgh.harvard.edu wrote:
Hi, I have a problem unpacking raw files for data processing from the scanner from a read only cd (compact disk). When I try to unpack from /media/disk no such directory exits, yet I can cd into this directory. If I make a work directory for raw_data and cp from this read only disk I get an error that the .dat files cannot be read. Below is the unpacking command. Are you familiar with this?
unpacksdcmdir -src ./ -targ ./ -scanonly scan.dat
I am using the above command in (nmr-std-env)
*note: if I used the unpack command of the files cp from the disk, I get the log file and the command initates reading the dicom files although I have the .dat error. Ideally I'd rather unpack directly from the CD.
Has anyone had this error or trouble unpacking files from CD?
Thank you! Tara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu