Hi, there,
I am using VirtualBox45 now. After I installed it, I tested it using tkmedit and tksurfer command, everything looks ok. However, when I try to run a recon-all command, it fails at the mris_volmask step, the error mask I got is:
"mris_volmask.bin: error while loading shared libraries: libtiff.so.3: cannot open shared object file: No such file or directory"
As someone suggested in the mailing list, I tried to make a symbolic link or a soft link named libtiff.so.3 which points to libtiff.so.4 using the following command: ln /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3 ln -sf /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3
But all of them gave me an error message: Permission denied.
Does anyone can help?
Thanks a lot! Guang
Hi Guang,
the error message implies you probably do not have access to those files or directory. You should probably ask a sysadmin to do it or if you have admin access, you can probably do something like
sudo <the command you tried>
The sudo command will prompt you type the root password.
--Thomas
On Aug 22, 2010, at 11:25 AM, Guang Zeng wrote:
Hi, there,
I am using VirtualBox45 now. After I installed it, I tested it using tkmedit and tksurfer command, everything looks ok. However, when I try to run a recon-all command, it fails at the mris_volmask step, the error mask I got is:
"mris_volmask.bin: error while loading shared libraries: libtiff.so. 3: cannot open shared object file: No such file or directory"
As someone suggested in the mailing list, I tried to make a symbolic link or a soft link named libtiff.so.3 which points to libtiff.so.4 using the following command: ln /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3 ln -sf /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3
But all of them gave me an error message: Permission denied.
Does anyone can help?
Thanks a lot! Guang
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works now,
Thanks a lot! Guang
CC: freesurfer@nmr.mgh.harvard.edu From: ythomas@csail.mit.edu To: freesurfer_zg@hotmail.com Subject: Re: [Freesurfer] a question about VirtualBoxFS4.5 Date: Sun, 22 Aug 2010 11:30:43 -0400
Hi Guang, the error message implies you probably do not have access to those files or directory. You should probably ask a sysadmin to do it or if you have admin access, you can probably do something like sudo <the command you tried> The sudo command will prompt you type the root password. --Thomas On Aug 22, 2010, at 11:25 AM, Guang Zeng wrote:Hi, there,
I am using VirtualBox45 now. After I installed it, I tested it using tkmedit and tksurfer command, everything looks ok. However, when I try to run a recon-all command, it fails at the mris_volmask step, the error mask I got is:
"mris_volmask.bin: error while loading shared libraries: libtiff.so.3: cannot open shared object file: No such file or directory"
As someone suggested in the mailing list, I tried to make a symbolic link or a soft link named libtiff.so.3 which points to libtiff.so.4 using the following command: ln /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3 ln -sf /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3
But all of them gave me an error message: Permission denied.
Does anyone can help?
Thanks a lot! Guang
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
fyi, we'll be posting a VirtualBox freesurfer v5.0 soon, and it shouldn't need that tiff link.
n.
On Sun, 2010-08-22 at 11:11 -0500, Guang Zeng wrote:
works now,
Thanks a lot! Guang
CC: freesurfer@nmr.mgh.harvard.edu From: ythomas@csail.mit.edu To: freesurfer_zg@hotmail.com Subject: Re: [Freesurfer] a question about VirtualBoxFS4.5 Date: Sun, 22 Aug 2010 11:30:43 -0400
Hi Guang,
the error message implies you probably do not have access to those files or directory. You should probably ask a sysadmin to do it or if you have admin access, you can probably do something like
sudo <the command you tried>
The sudo command will prompt you type the root password.
--Thomas
On Aug 22, 2010, at 11:25 AM, Guang Zeng wrote:
Hi, there, I am using VirtualBox45 now. After I installed it, I tested it using tkmedit and tksurfer command, everything looks ok. However, when I try to run a recon-all command, it fails at the mris_volmask step, the error mask I got is: "mris_volmask.bin: error while loading shared libraries: libtiff.so.3: cannot open shared object file: No such file or directory" As someone suggested in the mailing list, I tried to make a symbolic link or a soft link named libtiff.so.3 which points to libtiff.so.4 using the following command: ln /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3 ln -sf /usr/lib/libtiff.so.4 /usr/lib/libtiff.so.3 But all of them gave me an error message: Permission denied. Does anyone can help? Thanks a lot! Guang _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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