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Dear FreeSurfer,
Hi, I'm Yuelin, a graduate student from Caltech. I came across an issue using the Tkregister2 registration GUI: the target scan are always rendered with much lower resolution than the movable scan. This difference in resolution makes it almost impossible to registering details. I wonder if this is a known issue and is there any way to solve that? Any information will be very helpful!
Our lab currently uses version "freesurfer-local-build-dev-20200114" (this is what's shown with the "recon-all version" command, but should be 7.0 or 7.1), I also checked some older versions we used before and the same issue exists.
Thanks, Yuelin
Try using tkregisterfv (this is a front end for freeview)
On 1/29/2021 7:43 PM, Shi, Yuelin wrote:
External Email - Use Caution
Dear FreeSurfer,
Hi, I’m Yuelin, a graduate student from Caltech. I came across an issue using the Tkregister2 registration GUI: the target scan are always rendered with much lower resolution than the movable scan. This difference in resolution makes it almost impossible to registering details. I wonder if this is a known issue and is there any way to solve that? Any information will be very helpful!
Our lab currently uses version “freesurfer-local-build-dev-20200114” (this is what’s shown with the “recon-all version” command, but should be 7.0 or 7.1), I also checked some older versions we used before and the same issue exists.
Thanks,
Yuelin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Thanks Douglas, tkregisterfv looks like a nice alternative. However it only allows .lta format registration files, while all the registration files we previously used are in .reg format. I wonder if there is any way to convert between the two?
Many thanks, Yuelin
From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N. Greve Sent: Saturday, January 30, 2021 10:23 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Tkregister2 resolution difference
Try using tkregisterfv (this is a front end for freeview) On 1/29/2021 7:43 PM, Shi, Yuelin wrote:
External Email - Use Caution Dear FreeSurfer,
Hi, I'm Yuelin, a graduate student from Caltech. I came across an issue using the Tkregister2 registration GUI: the target scan are always rendered with much lower resolution than the movable scan. This difference in resolution makes it almost impossible to registering details. I wonder if this is a known issue and is there any way to solve that? Any information will be very helpful!
Our lab currently uses version "freesurfer-local-build-dev-20200114" (this is what's shown with the "recon-all version" command, but should be 7.0 or 7.1), I also checked some older versions we used before and the same issue exists.
Thanks, Yuelin
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You can run this tkregister2 --noedit --mov mov.mgz --targ targ.mgz --reg yourreg.dat --ltaout yourreg.lta
On 1/30/2021 7:32 PM, Shi, Yuelin wrote:
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Thanks Douglas, tkregisterfv looks like a nice alternative. However it only allows .lta format registration files, while all the registration files we previously used are in .reg format. I wonder if there is any way to convert between the two?
Many thanks,
Yuelin
*From:* freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] *On Behalf Of *Douglas N. Greve *Sent:* Saturday, January 30, 2021 10:23 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Tkregister2 resolution difference
Try using tkregisterfv (this is a front end for freeview)
On 1/29/2021 7:43 PM, Shi, Yuelin wrote:
* External Email - Use Caution * Dear FreeSurfer, Hi, I’m Yuelin, a graduate student from Caltech. I came across an issue using the Tkregister2 registration GUI: the target scan are always rendered with much lower resolution than the movable scan. This difference in resolution makes it almost impossible to registering details. I wonder if this is a known issue and is there any way to solve that? Any information will be very helpful! Our lab currently uses version “freesurfer-local-build-dev-20200114” (this is what’s shown with the “recon-all version” command, but should be 7.0 or 7.1), I also checked some older versions we used before and the same issue exists. Thanks, Yuelin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1awgqsyp5rSwnZanxruRYm6GPEr9P0lKQbAuXK_8I1flKL-6SOLXDa69K3SzvuknTJlRz7_7t6ajxnouOwiTKIcxFY3oHi08zOQ-vutphrHX1GwkWV-LiVNk_nicbrA3rmJrrQ09X-ZH4v8Zh9IuX2GcsVeBgRkvb1LUc7pzrvinyH-3KPs6WHHlJ44kHpS53BI0Bk5QBIicIRrCNwRFrBuTLMN4xyC8vrTcL3-14jbwiDduzmz_aXaJQOCD8MyyzH4SMiW3Nofm3ixpy9R0SOQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
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Shi, Yuelin