Dear Experts,
I load the T1 and aseg file in freeveiw and select the lookup table ,and show as isosurface in 3D view for a label .Is it possible to change the color(for example label 13 is blue but I want to show it as yellow!).another question is that if I want to show multiple labels which are not in the range how should I do it ? for example I want to see labels 11 & 13 & 30 but not the lables between ,how can I do it?thanks for your support.
Best Regards, Nazanin
Hi Nazanin,
To change color you will need to modify the look up table, i.e., load your own look up table. There is no way to only display a few selected labels. As a workaround, you may try applying a look up table with only a few labels in it.
Best, Ruopeng
On Feb 21, 2017, at 5:20 AM, N Saf nalives@gmail.com wrote:
Dear Experts,
I load the T1 and aseg file in freeveiw and select the lookup table ,and show as isosurface in 3D view for a label .Is it possible to change the color(for example label 13 is blue but I want to show it as yellow!).another question is that if I want to show multiple labels which are not in the range how should I do it ? for example I want to see labels 11 & 13 & 30 but not the lables between ,how can I do it?thanks for your support.
Best Regards, Nazanin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Ruopeng,
Thank you for the fast response ,where can I learn how to create my custom lookup table step by step ? and what the format of this file is?any help will be very appreciated.
Best Regards, Nazanin
On Tue, Feb 21, 2017 at 6:45 PM, Ruopeng Wang rpwang@nmr.mgh.harvard.edu wrote:
Hi Nazanin,
To change color you will need to modify the look up table, i.e., load your own look up table. There is no way to only display a few selected labels. As a workaround, you may try applying a look up table with only a few labels in it.
Best, Ruopeng
On Feb 21, 2017, at 5:20 AM, N Saf nalives@gmail.com wrote:
Dear Experts,
I load the T1 and aseg file in freeveiw and select the lookup table ,and
show as isosurface in 3D view for a label .Is it possible to change the color(for example label 13 is blue but I want to show it as yellow!).another question is that if I want to show multiple labels which are not in the range how should I do it ? for example I want to see labels 11 & 13 & 30 but not the lables between ,how can I do it?thanks for your support.
Best Regards, Nazanin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Just open FreeSurferColorLUT.txt file in your freesurfer installation directory, you should be able to figure the format.
On Feb 21, 2017, at 10:59 AM, N Saf nalives@gmail.com wrote:
Dear Ruopeng,
Thank you for the fast response ,where can I learn how to create my custom lookup table step by step ? and what the format of this file is?any help will be very appreciated.
Best Regards, Nazanin
On Tue, Feb 21, 2017 at 6:45 PM, Ruopeng Wang <rpwang@nmr.mgh.harvard.edu mailto:rpwang@nmr.mgh.harvard.edu> wrote: Hi Nazanin,
To change color you will need to modify the look up table, i.e., load your own look up table. There is no way to only display a few selected labels. As a workaround, you may try applying a look up table with only a few labels in it.
Best, Ruopeng
On Feb 21, 2017, at 5:20 AM, N Saf <nalives@gmail.com mailto:nalives@gmail.com> wrote:
Dear Experts,
I load the T1 and aseg file in freeveiw and select the lookup table ,and show as isosurface in 3D view for a label .Is it possible to change the color(for example label 13 is blue but I want to show it as yellow!).another question is that if I want to show multiple labels which are not in the range how should I do it ? for example I want to see labels 11 & 13 & 30 but not the lables between ,how can I do it?thanks for your support.
Best Regards, Nazanin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thank you very much ,it was a great help .
Best Regards, Nazanin
On Tue, Feb 21, 2017 at 7:34 PM, Ruopeng Wang rpwang@nmr.mgh.harvard.edu wrote:
Just open FreeSurferColorLUT.txt file in your freesurfer installation directory, you should be able to figure the format.
On Feb 21, 2017, at 10:59 AM, N Saf nalives@gmail.com wrote:
Dear Ruopeng,
Thank you for the fast response ,where can I learn how to create my custom lookup table step by step ? and what the format of this file is?any help will be very appreciated.
Best Regards, Nazanin
On Tue, Feb 21, 2017 at 6:45 PM, Ruopeng Wang rpwang@nmr.mgh.harvard.edu wrote:
Hi Nazanin,
To change color you will need to modify the look up table, i.e., load your own look up table. There is no way to only display a few selected labels. As a workaround, you may try applying a look up table with only a few labels in it.
Best, Ruopeng
On Feb 21, 2017, at 5:20 AM, N Saf nalives@gmail.com wrote:
Dear Experts,
I load the T1 and aseg file in freeveiw and select the lookup table
,and show as isosurface in 3D view for a label .Is it possible to change the color(for example label 13 is blue but I want to show it as yellow!).another question is that if I want to show multiple labels which are not in the range how should I do it ? for example I want to see labels 11 & 13 & 30 but not the lables between ,how can I do it?thanks for your support.
Best Regards, Nazanin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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N Saf -
Ruopeng Wang