Hi Bruce,
Yes, I would like to reduce the required calculation time, until desired results are available.
Best regards,
Iven
-----Ursprüngliche Nachricht----- Von: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Gesendet: Mittwoch, 20. Juli 2011 15:19 An: Fellhauer, Iven Cc: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Calculate WM, GM and CSF volume
Hi Iven,
is there a reason you don't want to just run recon-all -all? It's more time for the computer, but no more for you and will give you a lot more measures
cheers Bruce
On Wed, 20 Jul 2011, Fellhauer, Iven wrote:
Dear All,
I want to calculate the volume of WM, GM and CSF. First of all I have converted the .mri files to .mgz files. I have checked the ReconAllDevTable page to get the recon-all switches to calculate the volume of GM, WM and CFS.
I want to use the following switches to calculate the volume, but I' m not sure if this works/is right: recon-all -autorecon1 - gcareg -canorm -careg -rmneck -skull-lta -calabel -segstatts -subject <subject>
Did I miss something? Is there a better/faster way to get/calculate the volumes? The command returns the correct results?
Best regards,
Iven Fellhauer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Iven
we don't recommend that as many steps interact. For example, although we don't do it automatically now, we do have procedures for automatically correcting the aseg based on the subsequently created surfaces.
cheers Bruce On Thu, 21 Jul 2011, Fellhauer, Iven wrote:
Hi Bruce,
Yes, I would like to reduce the required calculation time, until desired results are available.
Best regards,
Iven
-----Ursprüngliche Nachricht----- Von: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Gesendet: Mittwoch, 20. Juli 2011 15:19 An: Fellhauer, Iven Cc: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Calculate WM, GM and CSF volume
Hi Iven,
is there a reason you don't want to just run recon-all -all? It's more time for the computer, but no more for you and will give you a lot more measures
cheers Bruce
On Wed, 20 Jul 2011, Fellhauer, Iven wrote:
Dear All,
I want to calculate the volume of WM, GM and CSF. First of all I have converted the .mri files to .mgz files. I have checked the ReconAllDevTable page to get the recon-all switches to calculate the volume of GM, WM and CFS.
I want to use the following switches to calculate the volume, but I' m not sure if this works/is right: recon-all -autorecon1 - gcareg -canorm -careg -rmneck -skull-lta -calabel -segstatts -subject <subject>
Did I miss something? Is there a better/faster way to get/calculate the volumes? The command returns the correct results?
Best regards,
Iven Fellhauer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Fellhauer, Iven