Hi All:
After imposing labels to a T1.mgz files in tkmedit, is it possible to write out dicom files with the label? Thanks in advance!
Tao
Sorry, we do not have an option to write out dicoms.
doug
T. Song wrote:
Hi All:
After imposing labels to a T1.mgz files in tkmedit, is it possible to write out dicom files with the label? Thanks in advance!
Tao _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug:
Is it possible to write out nifti or mgz files with labels+T1.mgz?
Thanks!
Tao
Doug Greve wrote:
Sorry, we do not have an option to write out dicoms.
doug
T. Song wrote:
Hi All:
After imposing labels to a T1.mgz files in tkmedit, is it possible to write out dicom files with the label? Thanks in advance!
Tao _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I'm not sure what you mean by "labels+T1". Also "labels" can mean a lot of different things (eg, aseg, aparc, label format). Can you be more specific?
T. Song wrote:
Hi Doug:
Is it possible to write out nifti or mgz files with labels+T1.mgz?
Thanks!
Tao
Doug Greve wrote:
Sorry, we do not have an option to write out dicoms.
doug
T. Song wrote:
Hi All:
After imposing labels to a T1.mgz files in tkmedit, is it possible to write out dicom files with the label? Thanks in advance!
Tao _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
OK. Say, I have a label file saved from a user defined ROI in tksurfer (ascii label). I superimpose the label with a T1.mgz file in tkmedit. Now I get a T1 weighted image with predefined ROI highlighted. Can I save the whole series to a nifti or mgz file? Thanks!
Tao
Doug Greve wrote:
I'm not sure what you mean by "labels+T1". Also "labels" can mean a lot of different things (eg, aseg, aparc, label format). Can you be more specific?
T. Song wrote:
Hi Doug:
Is it possible to write out nifti or mgz files with labels+T1.mgz?
Thanks!
Tao
Doug Greve wrote:
Sorry, we do not have an option to write out dicoms.
doug
T. Song wrote:
Hi All:
After imposing labels to a T1.mgz files in tkmedit, is it possible to write out dicom files with the label? Thanks in advance!
Tao _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
You can convert the label into a binary mask (mgz or nii) with mri_label2vol. You can really save a base image and an overlay together.
doug
T. Song wrote:
OK. Say, I have a label file saved from a user defined ROI in tksurfer (ascii label). I superimpose the label with a T1.mgz file in tkmedit. Now I get a T1 weighted image with predefined ROI highlighted. Can I save the whole series to a nifti or mgz file? Thanks!
Tao
Doug Greve wrote:
I'm not sure what you mean by "labels+T1". Also "labels" can mean a lot of different things (eg, aseg, aparc, label format). Can you be more specific?
T. Song wrote:
Hi Doug:
Is it possible to write out nifti or mgz files with labels+T1.mgz?
Thanks!
Tao
Doug Greve wrote:
Sorry, we do not have an option to write out dicoms.
doug
T. Song wrote:
Hi All:
After imposing labels to a T1.mgz files in tkmedit, is it possible to write out dicom files with the label? Thanks in advance!
Tao _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks! I was able to create a binary mask, and the result looks good. Now how do I save a base image with an overlay, in tkmedit of which command?
Tao
Doug Greve wrote:
You can convert the label into a binary mask (mgz or nii) with mri_label2vol. You can really save a base image and an overlay together.
doug
T. Song wrote:
OK. Say, I have a label file saved from a user defined ROI in tksurfer (ascii label). I superimpose the label with a T1.mgz file in tkmedit. Now I get a T1 weighted image with predefined ROI highlighted. Can I save the whole series to a nifti or mgz file? Thanks!
Tao
Doug Greve wrote:
I'm not sure what you mean by "labels+T1". Also "labels" can mean a lot of different things (eg, aseg, aparc, label format). Can you be more specific?
T. Song wrote:
Hi Doug:
Is it possible to write out nifti or mgz files with labels+T1.mgz?
Thanks!
Tao
Doug Greve wrote:
Sorry, we do not have an option to write out dicoms.
doug
T. Song wrote:
Hi All:
After imposing labels to a T1.mgz files in tkmedit, is it possible to write out dicom files with the label? Thanks in advance!
Tao _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug:
Which command should I use to save a base image with an overlay together? Thanks!
Tao
T. Song wrote:
Thanks! I was able to create a binary mask, and the result looks good. Now how do I save a base image with an overlay, in tkmedit of which command?
Tao
Doug Greve wrote:
You can convert the label into a binary mask (mgz or nii) with mri_label2vol. You can really save a base image and an overlay together.
doug
T. Song wrote:
OK. Say, I have a label file saved from a user defined ROI in tksurfer (ascii label). I superimpose the label with a T1.mgz file in tkmedit. Now I get a T1 weighted image with predefined ROI highlighted. Can I save the whole series to a nifti or mgz file? Thanks!
Tao
Doug Greve wrote:
I'm not sure what you mean by "labels+T1". Also "labels" can mean a lot of different things (eg, aseg, aparc, label format). Can you be more specific?
T. Song wrote:
Hi Doug:
Is it possible to write out nifti or mgz files with labels+T1.mgz?
Thanks!
Tao
Doug Greve wrote:
Sorry, we do not have an option to write out dicoms.
doug
T. Song wrote:
> Hi All: > > After imposing labels to a T1.mgz files in tkmedit, is it > possible to write out dicom files with the label? > Thanks in advance! > > Tao > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
you cannot do this, you have to save them separately
T. Song wrote:
Hi Doug:
Which command should I use to save a base image with an overlay together? Thanks!
Tao
T. Song wrote:
Thanks! I was able to create a binary mask, and the result looks good. Now how do I save a base image with an overlay, in tkmedit of which command?
Tao
Doug Greve wrote:
You can convert the label into a binary mask (mgz or nii) with mri_label2vol. You can really save a base image and an overlay together.
doug
T. Song wrote:
OK. Say, I have a label file saved from a user defined ROI in tksurfer (ascii label). I superimpose the label with a T1.mgz file in tkmedit. Now I get a T1 weighted image with predefined ROI highlighted. Can I save the whole series to a nifti or mgz file? Thanks!
Tao
Doug Greve wrote:
I'm not sure what you mean by "labels+T1". Also "labels" can mean a lot of different things (eg, aseg, aparc, label format). Can you be more specific?
T. Song wrote:
Hi Doug:
Is it possible to write out nifti or mgz files with labels+T1.mgz?
Thanks!
Tao
Doug Greve wrote:
> Sorry, we do not have an option to write out dicoms. > > doug > > T. Song wrote: > >> Hi All: >> >> After imposing labels to a T1.mgz files in tkmedit, is it >> possible to write out dicom files with the label? >> Thanks in advance! >> >> Tao >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >
freesurfer@nmr.mgh.harvard.edu
-
Doug Greve -
T. Song