you cannot do this, you have to save them separately
T. Song wrote:
Hi Doug:
Which command should I use to save a base image with an overlay together? Thanks!
Tao
T. Song wrote:
Thanks! I was able to create a binary mask, and the result looks good. Now how do I save a base image with an overlay, in tkmedit of which command?
Tao
Doug Greve wrote:
You can convert the label into a binary mask (mgz or nii) with mri_label2vol. You can really save a base image and an overlay together.
doug
T. Song wrote:
OK. Say, I have a label file saved from a user defined ROI in tksurfer (ascii label). I superimpose the label with a T1.mgz file in tkmedit. Now I get a T1 weighted image with predefined ROI highlighted. Can I save the whole series to a nifti or mgz file? Thanks!
Tao
Doug Greve wrote:
I'm not sure what you mean by "labels+T1". Also "labels" can mean a lot of different things (eg, aseg, aparc, label format). Can you be more specific?
T. Song wrote:
Hi Doug:
Is it possible to write out nifti or mgz files with labels+T1.mgz?
Thanks!
Tao
Doug Greve wrote:
> Sorry, we do not have an option to write out dicoms. > > doug > > T. Song wrote: > >> Hi All: >> >> After imposing labels to a T1.mgz files in tkmedit, is it >> possible to write out dicom files with the label? >> Thanks in advance! >> >> Tao >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >