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Hi Ahsan,

Can you try mri_segstats? https://secure-web.cisco.com/1wVzy7KLutxPiR4iLqjyLUq0iSRD9LkzadSa3f-BddmWJwZ...

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Ahsan Ali Sent: Friday, June 9, 2023 10:08 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Generate Stats File for fornix.mgz in T1 weighted MRI ?

External Email - Use Caution Hi,

Please help me with this.

With Regards Ahsan --------------------------------------------- Ahsan Ali Ph.D Scholar Department of Applied Mechanics and Biomedical Engineering (AMBE) Indian Institute of Technology Madras Chennai-600036, Tamil Nadu, INDIA Mob.:- +91-8899605552

On Fri, May 26, 2023 at 11:13 AM Ahsan Ali <ahsan889960@gmail.commailto:ahsan889960@gmail.com> wrote: Dear Sir/Madam,

I'm having a ADNI T1 weighted MRI database. I have run the recon-all command successfully and got a couple of default stats files in the stats folder. Then fornix.mgz is estimated using command "mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto_CCseg.mgz -f folder_name" successfully. Now what can be done to generate the stats for fornix.mgz? I've been struggling with this for a long time, please help me with this.

I'm using ubuntu. [cid:image001.jpg@01D99D1B.6155A1A0]

With Regards Ahsan --------------------------------------------- Ahsan Ali Ph.D Scholar Department of Applied Mechanics and Biomedical Engineering (AMBE) Indian Institute of Technology Madras Chennai-600036, Tamil Nadu, INDIA Mob.:- +91-8899605552