Dear FreeSurfers,

The –noconform flag of mri_normalize doesn’t seem to work properly in the centos4_x86_64_stable-pub-v5.0.0 build. I have been trying to process a volume with an isotropic resolution of 0.7mm using

recon-all –cm –autorecon1 –s <subject id>

as the command line. The conformation is skipped until mri_normalize, but afterwards the output volume T1.mgz is conformed. Although the log during mri_normalize says:

“not interpolating and embedding volume to be 256^3…”

I have been trying to run it using the recon-all script and running mri_normalize by hand, the error is the same. A fix is highly appreciated.

Thanks,

Falk Lüsebrink