did you check the accuracy of the talairach with tkregister2 or tkmedit? If it's really bad, then you can either fix it with tkregister2, or tell recon-all to not use it. If it is accurate but being incorrectly flagged, you can tell recon-all to skip the checking.

cheers Bruce

On Wed, 3 Nov 2010, Rapuano, Kristina (NIH/NIMH) [F] wrote:

Hello there,

I am fairly new to freesurfer, and received an error message that I am not sure how to handle. I was running recon-all (-autorecon1 and -autorecon2) which then quit with this error:

cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Fri Oct 29 15:05:25 EDT 2010 /misc/data30/kyle/obesity_study/freesurfer/o_s307/mri

talairach_afd -T 0.005 -xfm transforms/talairach.xfm

ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***Fp=0.0001, pval=0.0000 < threshold=0.0050) Linux thalamos 2.6.18-194.17.4.el5 #1 SMP Mon Oct 25 15:50:53 EDT 2010 x64 x86_64 GNU/Linux

Please let me know if you have any idea what should be done about this.

Thank you! Kristina

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Kristina Rapuano Post-Bac IRTA Laboratory of Brain and Cognition, NIMH/NIH/DHHS Building 10, Room 4C214 10 Center Drive MSC 1366 Bethesda MD 20892-1366 Phone: (301) 402-4419 E-Mail : rapuanokm@mail.nih.gov

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