Dear Freesurfer group -
I am receiving the following error when I try view results of a mri_glmfit. Any assistance would be greatly appreciated. Thanks, Chaz
freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:annot=aparc.annot:annot_outline=1:overlay=lh.gender_worstpain_age.glmdir/worstpain/sig.mgh:overlay_threshold=4,5 -viewport 3d
Unrecognized sub-option flag 'annot_outline'.
FREESURFER_HOME: /Volumes/projects/painimaging/Bishop/FreeSurfer_R01/freesurfer
Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Kernel info: Darwin 14.5.0 x86_64
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Please include the following additional information in your report:
1) subject name
2) the entire command-line executed
3) the error message generated
4) optionally include the subject's /script/recon-all.log
are you using 5.3? I think that option is only supported in version 6. Try removing :annot_outline=1
On 11/10/2015 05:43 PM, Gay,Charles Wysaw wrote:
Dear Freesurfer group -
I am receiving the following error when I try view results of a mri_glmfit. Any assistance would be greatly appreciated. Thanks, Chaz
freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:annot=aparc.annot:annot_outline=1:overlay=lh.gender_worstpain_age.glmdir/worstpain/sig.mgh:overlay_threshold=4,5 -viewport 3d
Unrecognized sub-option flag 'annot_outline'.
FREESURFER_HOME: /Volumes/projects/painimaging/Bishop/FreeSurfer_R01/freesurfer
Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Kernel info: Darwin 14.5.0 x86_64
Please include the following additional information in your report:
subject name
the entire command-line executed
the error message generated
optionally include the subject's /script/recon-all.log
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