Do you have permissions to the file? If so, rerun recon-all with -debug as the first option, then send the terminal output to the list. doug ps. Please send emails to the list and not to us individually. thanks!
On 7/25/13 2:31 PM, Kyllo, Hannah M wrote:
yes
- Hannah Kyllo
*From:* freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas Greve [greve@nmr.mgh.harvard.edu] *Sent:* Thursday, July 25, 2013 11:46 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] bug reporting
Does subj001.nii.gz exist in the folder you ran recon-all from?
On 7/25/13 12:21 PM, Kyllo, Hannah M wrote:
Hello,
I've received the following error using Ubuntu 13.04:
"WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!
ERROR: cannot find subj001.nii.gz Linux neuron 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s exited with ERRORS at Thu Jul 25 11:15:50 CDT 2013"
thanks in advance for your input,
- Hannah Kyllo
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Douglas Greve