External Email - Use Caution
Not sure what happened here, but running Freesurfer on Ubuntu and not getting this error when trying to view volumes:
freeview -v \ mri/T1.mgz \ mri/brainmask.mgz \ mri/wm.mgz:visible=0 \ mri/aseg.mgz:colormap=lut:opacity=0.2 \ -f surf/lh.white:edgecolor=blue \ surf/rh.white:edgecolor=blue \ surf/rh.pial:edgecolor=red \ surf/lh.pial:edgecolor=red \ surf/rh.inflated:visible=0 \ surf/lh.inflated:visible=0
But it get the error:
bash: mri/T1.mgz: Permission denied
No idea why or how to fix this. I have also tried other subjects but same thing.
do you have permission to read that file?
On 06/14/2018 10:04 AM, Brad Matushewski wrote:
External Email - Use Caution
Not sure what happened here, but running Freesurfer on Ubuntu and not getting this error when trying to view volumes:
freeview -v \ mri/T1.mgz \ mri/brainmask.mgz \ mri/wm.mgz:visible=0 \ mri/aseg.mgz:colormap=lut:opacity=0.2 \ -f surf/lh.white:edgecolor=blue \ surf/rh.white:edgecolor=blue \ surf/rh.pial:edgecolor=red \ surf/lh.pial:edgecolor=red \ surf/rh.inflated:visible=0 \ surf/lh.inflated:visible=0
But it get the error:
*bash: mri/T1.mgz: Permission denied*
No idea why or how to fix this. I have also tried other subjects but same thing.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Silly error - there was an extra space in the line.
Problem solved.
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Brad Matushewski bjmatush@uwo.ca Sent: Thursday, June 14, 2018 10:04:57 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] bash: mri/T1.mgz: Permission denied
External Email - Use Caution
Not sure what happened here, but running Freesurfer on Ubuntu and not getting this error when trying to view volumes:
freeview -v \ mri/T1.mgz \ mri/brainmask.mgz \ mri/wm.mgz:visible=0 \ mri/aseg.mgz:colormap=lut:opacity=0.2 \ -f surf/lh.white:edgecolor=blue \ surf/rh.white:edgecolor=blue \ surf/rh.pial:edgecolor=red \ surf/lh.pial:edgecolor=red \ surf/rh.inflated:visible=0 \ surf/lh.inflated:visible=0
But it get the error:
bash: mri/T1.mgz: Permission denied
No idea why or how to fix this. I have also tried other subjects but same thing.
freesurfer@nmr.mgh.harvard.edu