Hi Lena,

many of us are struggling to get home amid all the snow on the east coast. We'll figure this out in the next few days.

cheers Bruce

On Tue, 28 Dec 2010, Lena Palaniyappan wrote:

I am not able to run recon-all localGI in v5.0 and I suspect this has something to do with the way pial surfaces are produced in v5.0 (the mris_make_surfaces bug)

ERROR: compute_lgi did not create output file '/Volumes/FREECOM/Applications/freesurfer/subjects/conn/conn02/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc'! Darwin pmc10113.nottingham.ac.uk 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386

Is there any workaround/patching?

Cheers Lena _______________________________________________________ Lena Palaniyappan Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH

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