I am not able to run recon-all localGI in v5.0 and I suspect this has something to do with the way pial surfaces are produced in v5.0 (the mris_make_surfaces bug)
ERROR: compute_lgi did not create output file '/Volumes/FREECOM/Applications/freesurfer/subjects/conn/conn02/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc'! Darwin pmc10113.nottingham.ac.uk 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386
Is there any workaround/patching?
Cheers Lena _______________________________________________________ Lena Palaniyappan Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
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