Hello I ran recon-all auto_recon1. and the resulting brainmask file, has a poor talairazation. the ac-pc line is not horizontal, it's tilted, and the interhemisphere fissure is tilted too. how do I fix this? I have attached a picture of the brain
Hi Jon, the data are not reoriented or resliced into talairach space. It is just the transform that is computed. To inspect whether this was done right, use
tkregister2 --s subject --fstal
doug
On 03/26/2013 12:20 PM, Jon Wieser wrote:
Hello I ran recon-all auto_recon1. and the resulting brainmask file, has a poor talairazation. the ac-pc line is not horizontal, it's tilted, and the interhemisphere fissure is tilted too. how do I fix this? I have attached a picture of the brain
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Jon Wieser