Hi Jon, the data are not reoriented or resliced into talairach space. It is just the transform that is computed. To inspect whether this was done right, use
tkregister2 --s subject --fstal
doug
On 03/26/2013 12:20 PM, Jon Wieser wrote:
Hello I ran recon-all auto_recon1. and the resulting brainmask file, has a poor talairazation. the ac-pc line is not horizontal, it's tilted, and the interhemisphere fissure is tilted too. how do I fix this? I have attached a picture of the brain
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer