i´ll rephrase my question: can one display "filled" labels and other "outlined" labels at the same time in tksurfer? see my current attachment (made with help from Gimp..): surface+curvature+aparc (outlined)+some label (filled)+some label (filled).
mri_annotation2label will give me labels, fine, but it won´t solve my rephrased question, i think.
appreciate your help! -joost
Or do you want the separate units to have separate colors? If that's your
goal you can use mri_annotation2label to turn all the parcellation units into labels and only use the 2 (or more) that you want.
cheers, Bruce
On Wed, 19 Nov 2008, j janssen wrote:
Hi Bruce,
to be 100% sure that you guys understand what i want, i have attached the same attachment as before but now i quickly manually-painted in some regions using Gimp. Now, obviously i would like to do this not-manually and within FreeSurfer. is this possible?
you can use the "custom fill" tool to fill up to other labels.
how can i use "custom fill" to fill up a specific label, making it visible in tksurfer while keeping the other labels in 'outlined' status?
You can also start with "all marked vertices" and click in a number of
regions, then save them as a label (you can change its color with the "change label color" button on the 2nd row of icons near the right).
with "its" you refer to 1 label representing "all marked vertices" for which the color can be customized. look at the attachment, this is not what i would want. maybe i´m missing something obvious, apologies.
-joost
On Wed, 19 Nov 2008, j janssen wrote:
Hi,
using version 4.0.5
look at the attached picture. its the result of:
tksurfer code lh inflated -aparc aparc -gray
i have selected one region (yellow outline). i would like to
- fill this region and some other regions, *but not all regions*!
- give the filled regions different color-labelings
- i would like to display them (outlined and filled regions) at the
*same* time.
i have tried numerous ways, without result. any suggestions?
thanks, -joost
I guess you could write one of them into an overlay or curv file and display it filled with the outlined labels, but we don't directly support this On Wed, 19 Nov 2008, j janssen wrote:
i´ll rephrase my question: can one display "filled" labels and other "outlined" labels at the same time in tksurfer? see my current attachment (made with help from Gimp..): surface+curvature+aparc (outlined)+some label (filled)+some label (filled).
mri_annotation2label will give me labels, fine, but it won´t solve my rephrased question, i think.
appreciate your help! -joost
Or do you want the separate units to have separate colors? If that's your
goal you can use mri_annotation2label to turn all the parcellation units into labels and only use the 2 (or more) that you want.
cheers, Bruce
On Wed, 19 Nov 2008, j janssen wrote:
Hi Bruce,
to be 100% sure that you guys understand what i want, i have attached the same attachment as before but now i quickly manually-painted in some regions using Gimp. Now, obviously i would like to do this not-manually and within FreeSurfer. is this possible?
you can use the "custom fill" tool to fill up to other labels.
how can i use "custom fill" to fill up a specific label, making it visible in tksurfer while keeping the other labels in 'outlined' status?
You can also start with "all marked vertices" and click in a number of
regions, then save them as a label (you can change its color with the "change label color" button on the 2nd row of icons near the right).
with "its" you refer to 1 label representing "all marked vertices" for which the color can be customized. look at the attachment, this is not what i would want. maybe i´m missing something obvious, apologies.
-joost
On Wed, 19 Nov 2008, j janssen wrote:
Hi,
using version 4.0.5
look at the attached picture. its the result of:
tksurfer code lh inflated -aparc aparc -gray
i have selected one region (yellow outline). i would like to
- fill this region and some other regions, *but not all regions*!
- give the filled regions different color-labelings
- i would like to display them (outlined and filled regions) at the
*same* time.
i have tried numerous ways, without result. any suggestions?
thanks, -joost
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
j janssen