At what point in the processing pipeline is mri_ms_fitparms?
I am trying to convert data without header information (TE, TR, Flip angle) to data that freesurfer can use using mri_ms_fitparms and entering that info. This creates a T1 and PD image but I want to run it through the entire reconstruction. So I was wondering two things: 1) when should the mri_ms_fitparms be done on the data and 2) what point in the pipeline does it "spit out" the data?
Thanks
Adam
--------------------------------- Yahoo! Messenger with Voice. Make PC-to-Phone Calls to the US (and 30+ countries) for 2¢/min or less.
you don't need it at all if you have T1 weighted data. Only if you're interested in the parameter maps themselves.
Bruce On Thu, 4 May 2006, adam walczak wrote:
At what point in the processing pipeline is mri_ms_fitparms?
I am trying to convert data without header information (TE, TR, Flip angle) to data that freesurfer can use using mri_ms_fitparms and entering that info. This creates a T1 and PD image but I want to run it through the entire reconstruction. So I was wondering two things: 1) when should the mri_ms_fitparms be done on the data and 2) what point in the pipeline does it "spit out" the data?
Thanks
Adam
Yahoo! Messenger with Voice. Make PC-to-Phone Calls to the US (and 30+ countries) for 2¢/min or less.
Ok. Thanks. So what would the data I use to make the parameter maps also work for the reconstruction pipeline?
Adam
Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: you don't need it at all if you have T1 weighted data. Only if you're interested in the parameter maps themselves.
Bruce On Thu, 4 May 2006, adam walczak wrote:
At what point in the processing pipeline is mri_ms_fitparms?
I am trying to convert data without header information (TE, TR, Flip angle) to data that freesurfer can use using mri_ms_fitparms and entering that info. This creates a T1 and PD image but I want to run it through the entire reconstruction. So I was wondering two things: 1) when should the mri_ms_fitparms be done on the data and 2) what point in the pipeline does it "spit out" the data?
Thanks
Adam
Yahoo! Messenger with Voice. Make PC-to-Phone Calls to the US (and 30+ countries) for 2¢/min or less.
adam --------------------------------- Yahoo! Messenger with Voice. PC-to-Phone calls for ridiculously low rates.
why do you want parameter maps? What acquisitions do you have? On Fri, 5 May 2006, adam walczak wrote:
Ok. Thanks. So what would the data I use to make the parameter maps also work for the reconstruction pipeline?
Adam
Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: you don't need it at all if you have T1 weighted data. Only if you're interested in the parameter maps themselves.
Bruce On Thu, 4 May 2006, adam walczak wrote:
At what point in the processing pipeline is mri_ms_fitparms?
I am trying to convert data without header information (TE, TR, Flip angle) to data that freesurfer can use using mri_ms_fitparms and entering that info. This creates a T1 and PD image but I want to run it through the entire reconstruction. So I was wondering two things: 1) when should the mri_ms_fitparms be done on the data and 2) what point in the pipeline does it "spit out" the data?
Thanks
Adam
Yahoo! Messenger with Voice. Make PC-to-Phone Calls to the US (and 30+ countries) for 2¢/min or less.
adam
Yahoo! Messenger with Voice. PC-to-Phone calls for ridiculously low rates.
freesurfer@nmr.mgh.harvard.edu
-
adam walczak -
Bruce Fischl