Begin forwarded message:
From: Kiley kiley_seymour@yahoo.com.au Date: January 13, 2012 1:17:04 PM GMT+01:00 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: matlab: No MATLAB bin directory for this machine architecture.
Hi Freesurfers
I have just begun using Freesurfer (and the mac terminal) to do my retinotopic mapping. So far I have found the reconstruction and pre-analysis to be far superior than anything I have used before. However, I am now at the stage of running the selxavg3-sess command ( selxavg3-sess -a rtopy.self.lh -s IFEE2211 -no-preproc ) and I am getting the following error. I googled the error and found a post that says I must change a line in the selxavg3-sess script so that my 32bit version of MATLAB can be used, but I am not very familiar with the files formats used and my attempts to change them in order to successfully progress have been futile. Your help for such a 'basic user' question will be very much appreciated. Thanks in advance!
Kiley
[labs-MacBook-Pro:fmri/retmapping/fsRetinotopy] kiley% selxavg3-sess -a rtopy.self.lh -s IFEE2211 -no-preproc
Surface data self lh
selxavg3-sess logfile is /Users/kiley/fmri/retmapping/fsRetinotopy/log/selxavg3-sess-bold-rtopy.self.lh-120113110658.log
/Users/kiley//fmri/retmapping/fsRetinotopy/IFEE2211 Fri Jan 13 11:06:59 CET 2012 anadir = /Users//fmri/retmapping/fsRetinotopy/IFEE2211/bold/rtopy.self.lh DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1
------- matlab output --------------------
matlab: No MATLAB bin directory for this machine architecture.
ARCH = maci64
ERROR: fast_selxavg3() failed\n
Hi Kiley, you should not have to change anything. matlab just needs to be in your path. When you open a terminal and type: which matlab what do you get? doug
Kiley wrote:
Begin forwarded message:
*From: *Kiley <kiley_seymour@yahoo.com.au mailto:kiley_seymour@yahoo.com.au> *Date: *January 13, 2012 1:17:04 PM GMT+01:00 *To: *freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu *Subject: **Re: matlab: No MATLAB bin directory for this machine architecture.*
Hi Freesurfers
I have just begun using Freesurfer (and the mac terminal) to do my retinotopic mapping. So far I have found the reconstruction and pre-analysis to be far superior than anything I have used before. However, I am now at the stage of running the selxavg3-sess command ( selxavg3-sess -a rtopy.self.lh -s IFEE2211 -no-preproc ) and I am getting the following error. I googled the error and found a post that says I must change a line in the selxavg3-sess script so that my 32bit version of MATLAB can be used, but I am not very familiar with the files formats used and my attempts to change them in order to successfully progress have been futile. Your help for such a 'basic user' question will be very much appreciated. Thanks in advance!
Kiley
[labs-MacBook-Pro:fmri/retmapping/fsRetinotopy] kiley% selxavg3-sess -a rtopy.self.lh -s IFEE2211 -no-preproc
Surface data self lh
selxavg3-sess logfile is /Users/kiley/fmri/retmapping/fsRetinotopy/log/selxavg3-sess-bold-rtopy.self.lh-120113110658.log
/Users/kiley//fmri/retmapping/fsRetinotopy/IFEE2211 Fri Jan 13 11:06:59 CET 2012 anadir = /Users//fmri/retmapping/fsRetinotopy/IFEE2211/bold/rtopy.self.lh DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1
------- matlab output --------------------
matlab: No MATLAB bin directory for this machine architecture.
ARCH = maci64
ERROR: fast_selxavg3() failed\n
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Kiley, the problem is with your matlab setup. As you point out your matlab is 32 bit but your machine is 64 bit. This should be able to run, but I don't know how to modify the matlab install to make it run. If you can, try to upgrade to the 64bit version. doug
On 1/13/12 1:48 PM, Kiley wrote:
Begin forwarded message:
*From: *Kiley <kiley_seymour@yahoo.com.au mailto:kiley_seymour@yahoo.com.au> *Date: *January 13, 2012 1:17:04 PM GMT+01:00 *To: *freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu *Subject: **Re: matlab: No MATLAB bin directory for this machine architecture.*
Hi Freesurfers
I have just begun using Freesurfer (and the mac terminal) to do my retinotopic mapping. So far I have found the reconstruction and pre-analysis to be far superior than anything I have used before. However, I am now at the stage of running the selxavg3-sess command ( selxavg3-sess -a rtopy.self.lh -s IFEE2211 -no-preproc ) and I am getting the following error. I googled the error and found a post that says I must change a line in the selxavg3-sess script so that my 32bit version of MATLAB can be used, but I am not very familiar with the files formats used and my attempts to change them in order to successfully progress have been futile. Your help for such a 'basic user' question will be very much appreciated. Thanks in advance!
Kiley
[labs-MacBook-Pro:fmri/retmapping/fsRetinotopy] kiley% selxavg3-sess -a rtopy.self.lh -s IFEE2211 -no-preproc
Surface data self lh
selxavg3-sess logfile is /Users/kiley/fmri/retmapping/fsRetinotopy/log/selxavg3-sess-bold-rtopy.self.lh-120113110658.log
/Users/kiley//fmri/retmapping/fsRetinotopy/IFEE2211 Fri Jan 13 11:06:59 CET 2012 anadir = /Users//fmri/retmapping/fsRetinotopy/IFEE2211/bold/rtopy.self.lh DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1
------- matlab output --------------------
matlab: No MATLAB bin directory for this machine architecture.
ARCH = maci64
ERROR: fast_selxavg3() failed\n
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas Greve -
Douglas N Greve
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Kiley