Hi Kiley, you should not have to change anything. matlab just needs to be in your path. When you open a terminal and type: which matlab what do you get? doug
Kiley wrote:
Begin forwarded message:
*From: *Kiley <kiley_seymour@yahoo.com.au mailto:kiley_seymour@yahoo.com.au> *Date: *January 13, 2012 1:17:04 PM GMT+01:00 *To: *freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu *Subject: **Re: matlab: No MATLAB bin directory for this machine architecture.*
Hi Freesurfers
I have just begun using Freesurfer (and the mac terminal) to do my retinotopic mapping. So far I have found the reconstruction and pre-analysis to be far superior than anything I have used before. However, I am now at the stage of running the selxavg3-sess command ( selxavg3-sess -a rtopy.self.lh -s IFEE2211 -no-preproc ) and I am getting the following error. I googled the error and found a post that says I must change a line in the selxavg3-sess script so that my 32bit version of MATLAB can be used, but I am not very familiar with the files formats used and my attempts to change them in order to successfully progress have been futile. Your help for such a 'basic user' question will be very much appreciated. Thanks in advance!
Kiley
[labs-MacBook-Pro:fmri/retmapping/fsRetinotopy] kiley% selxavg3-sess -a rtopy.self.lh -s IFEE2211 -no-preproc
Surface data self lh
selxavg3-sess logfile is /Users/kiley/fmri/retmapping/fsRetinotopy/log/selxavg3-sess-bold-rtopy.self.lh-120113110658.log
/Users/kiley//fmri/retmapping/fsRetinotopy/IFEE2211 Fri Jan 13 11:06:59 CET 2012 anadir = /Users//fmri/retmapping/fsRetinotopy/IFEE2211/bold/rtopy.self.lh DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1
------- matlab output --------------------
matlab: No MATLAB bin directory for this machine architecture.
ARCH = maci64
ERROR: fast_selxavg3() failed\n
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer