you need to run specify -qcache on the recon-all command line. You should be able to just run it now that -all has finished and it will be pretty fast.

cheers Bruce

On Wed, 14 Aug 2013, Muhammad Naveed Iqbal Qureshi wrote:

Dear List Members,   I converted my data from .dcm to .nii and than from .nii to .mgz volume, after that I have run the following command to calculate the cortical thickness;   recon-all -s sub01 -all

but I have not get ".thickness.fwhm15.fsaverage.mgh" files in the surf folder after recon-all get finished without errors.   Please tell me the reason of the absence of these files.

Previously I did not converted my data to .nii and I got all the files in surf folder. I used the following command earlier   recon-all -i <path-to-dicom> -subject <name-of-the-subject> -all -qcache &   waiting for reply

Best Regards, Muhammad Naveed Iqbal Qureshi P please don't print this e-mail unless you really need to