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Hello Freesurfer team, I did an AAL atlas on the surface using mri_vol2surf, however when I look at this overlay there are many holes in the labels with vertices that don't belong to any label. Could u help me with this problem?
Look at the surface superimposed on the volume along with the AAL segmentation to make sure that it intersects the segmentation at all vertices. You can find the vertex numbers for the holes, and then go specifically to that vertex
On 1/27/2021 6:27 AM, Alberto Del Cerro Leon wrote:
External Email - Use Caution
Hello Freesurfer team, I did an AAL atlas on the surface using mri_vol2surf, however when I look at this overlay there are many holes in the labels with vertices that don't belong to any label. Could u help me with this problem?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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I found the vertex for the holes but how can i modify them or how can I solve them?
El mié, 27 ene 2021 a las 16:36, Douglas N. Greve (dgreve@mgh.harvard.edu) escribió:
Look at the surface superimposed on the volume along with the AAL segmentation to make sure that it intersects the segmentation at all vertices. You can find the vertex numbers for the holes, and then go specifically to that vertex
On 1/27/2021 6:27 AM, Alberto Del Cerro Leon wrote:
External Email - Use CautionHello Freesurfer team, I did an AAL atlas on the surface using mri_vol2surf, however when I look at this overlay there are many holes in the labels with vertices that don't belong to any label. Could u help me with this problem?
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/10ozXzPwh1D7DVDOq7RB7YHt6wxxReeXeoYDeFefWkSOUU5...
You can manully edit the annotation or you can manually edit the AAL segmentation to fill in the holes
On 1/28/2021 6:09 AM, Alberto Del Cerro Leon wrote:
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I found the vertex for the holes but how can i modify them or how can I solve them?
El mié, 27 ene 2021 a las 16:36, Douglas N. Greve (<dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu>) escribió:
Look at the surface superimposed on the volume along with the AAL segmentation to make sure that it intersects the segmentation at all vertices. You can find the vertex numbers for the holes, and then go specifically to that vertex On 1/27/2021 6:27 AM, Alberto Del Cerro Leon wrote:External Email - Use Caution Hello Freesurfer team, I did an AAL atlas on the surface using mri_vol2surf, however when I look at this overlay there are many holes in the labels with vertices that don't belong to any label. Could u help me with this problem? _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/10ozXzPwh1D7DVDOq7RB7YHt6wxxReeXeoYDeFefWkSOUU5wjJZh8SkGv_CqUx8lnLYyYtHMXQtR4plw1rmM8quVJFm6KaSEtUiod63NY55vupaTJ0CJezCnWqS3fRXV13tWFMEaXveO4aPua7u3AKW1dEcUGjY9DaOD50oVPswA7emxwV4FvqgtzgOPLU5QH3DnENZjlngtFiPiX0s0LnFap8AGBvctEipNd0DT23Rxma57Cm5Q74YXX1jU-B7uKwXhhaIOoLu2hw5Llk1nnSg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/10ozXzPwh1D7DVDOq7RB7YHt6wxxReeXeoYDeFefWkSOUU5wjJZh8SkGv_CqUx8lnLYyYtHMXQtR4plw1rmM8quVJFm6KaSEtUiod63NY55vupaTJ0CJezCnWqS3fRXV13tWFMEaXveO4aPua7u3AKW1dEcUGjY9DaOD50oVPswA7emxwV4FvqgtzgOPLU5QH3DnENZjlngtFiPiX0s0LnFap8AGBvctEipNd0DT23Rxma57Cm5Q74YXX1jU-B7uKwXhhaIOoLu2hw5Llk1nnSg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
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Alberto Del Cerro Leon -
Douglas N. Greve