Hi
- Thank you for a fantastic piece of software :-)
- I have en one question:
- In the GUI-module QDEC, is it possible to adjust the GLM-model to account for a pair-matched cohort? (diabetes vs non-diabetes - matched pairwise by age, sex and bmi)
Kind regards Christian, Denmark Christian Buhl Medical Doctor (MD), PhD-student Institute of Biomedicine, Pharmacology Aarhus University Wilhem Meyers Allé 4, Bldg. 1240 DK-8000 Aarhus C Tel: +45 2986 9829
Hello,
I was wondering what output from the recon-all freesurfer scripts would be best to make a grey matter only mask?
Thanks,
Emily
you can do this cd $SUBJECTS_DIR/subject/mri mri_binarize --i aparc+aseg.mgz --gm --o gmmask.mgz
doug
On 11/05/2013 03:45 PM, ebelleau@uwm.edu wrote:
Hello,
I was wondering what output from the recon-all freesurfer scripts would be best to make a grey matter only mask?
Thanks,
Emily
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
No sorry, you'll have to use the "command line" stream rather than QDEC (ie, mris_preproc, mri_surf2surf to smooth, and mri_glmfit). See the FSGD examples on our wiki for how to do the paired analysis
doug
On 11/05/2013 12:07 PM, christian buhl wrote:
Hi
- Thank you for a fantastic piece of software :-)
- I have en one question:
- In the GUI-module QDEC, is it possible to adjust the GLM-model to
account for a pair-matched cohort? (diabetes vs non-diabetes - matched pairwise by age, sex and bmi) Kind regards Christian, Denmark Christian Buhl Medical Doctor (MD), PhD-student Institute of Biomedicine, Pharmacology Aarhus University Wilhem Meyers Allé 4, Bldg. 1240 DK-8000 Aarhus C Tel: +45 2986 9829**
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
christian buhl -
Douglas N Greve -
ebelleau＠uwm.edu