you can do this cd $SUBJECTS_DIR/subject/mri mri_binarize --i aparc+aseg.mgz --gm --o gmmask.mgz
doug
On 11/05/2013 03:45 PM, ebelleau@uwm.edu wrote:
Hello,
I was wondering what output from the recon-all freesurfer scripts would be best to make a grey matter only mask?
Thanks,
Emily
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