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Hi, is there a tool to make a tetrahedral mesh of the brain from the MRI T1w image and/or its whole-brain segmentation? I need it for the finite elements method.
-Don
Why not samseg?
On 12/20/2022 12:50 PM, Donatas Sederevičius wrote:
External Email - Use Caution
Hi, is there a tool to make a tetrahedral mesh of the brain from the MRI T1w image and/or its whole-brain segmentation? I need it for the finite elements method.
-Don
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Ah, I see. However, I would like to get it for brain scans with a pathology (a tumour).
2022-12-21, tr, 05:39 Douglas N. Greve dgreve@mgh.harvard.edu rašė:
Why not samseg?
On 12/20/2022 12:50 PM, Donatas Sederevičius wrote:
External Email - Use CautionHi, is there a tool to make a tetrahedral mesh of the brain from the MRI T1w image and/or its whole-brain segmentation? I need it for the finite elements method.
-Don
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Not sure what it will do then. It will put vertices in that region. When you run samseg, add --save-mesh
On 12/21/2022 8:18 AM, Don Se wrote:
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Ah, I see. However, I would like to get it for brain scans with a pathology (a tumour).
2022-12-21, tr, 05:39 Douglas N. Greve dgreve@mgh.harvard.edu rašė:
Why not samseg? On 12/20/2022 12:50 PM, Donatas Sederevičius wrote:External Email - Use Caution Hi, is there a tool to make a tetrahedral mesh of the brain from the MRI T1w image and/or its whole-brain segmentation? I need it for the finite elements method. -Don _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1d9U--1LYLJciksGOBj_OYnEDUn3HGm68sRyYUTToGRPTqHq1bzOOe2bC_bUSJTtVQ0uHo5CxUWxBLky8eWf8bjWt6mV9Vq2yZ1YTdRErDILFCg3Z5_2Fs8ergX3mwWLdGY_RjCyE-b510pZB7beyAK2CB8zOcgltQ3kfTJDDt_FNRKvPuJnWkFHRXwbMToBfoJ6tKcKlnbPlOSJ4qe2mMvMl9lx9UdhQONCo58ihqGxhNsoZgC3e5m-USWza1l0v7jktR1v6zZx-GGn8eVHOXo-jj5wRsWw_eeTH0tizefsW2fFYGH71R5q89ug0Tb7Su9Dbv0aIaM_GQVMl5rK1_Q/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1d9U--1LYLJciksGOBj_OYnEDUn3HGm68sRyYUTToGRPTqHq1bzOOe2bC_bUSJTtVQ0uHo5CxUWxBLky8eWf8bjWt6mV9Vq2yZ1YTdRErDILFCg3Z5_2Fs8ergX3mwWLdGY_RjCyE-b510pZB7beyAK2CB8zOcgltQ3kfTJDDt_FNRKvPuJnWkFHRXwbMToBfoJ6tKcKlnbPlOSJ4qe2mMvMl9lx9UdhQONCo58ihqGxhNsoZgC3e5m-USWza1l0v7jktR1v6zZx-GGn8eVHOXo-jj5wRsWw_eeTH0tizefsW2fFYGH71R5q89ug0Tb7Su9Dbv0aIaM_GQVMl5rK1_Q/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.massgeneralbrigham.org/complianceline <https://secure-web.cisco.com/161wYoSeQ60SLehxNmO0vzifJP-2fX3578sFDwd3aaq1zvAM2zxR-NYaYfvmAXNPEFqyTcv51od1UoUhSwKw9PAMaSaN-leX0Yp4McRKSJuDQc2SsJhHL7uFAO9C-quAhLp9Bk8sAcZibmVDIcuNs63uJZa_Ew9H-8BGk0Y-zRD728p9a-MDbYEWBYDEKMsmREn8ZHBJdA9zosJfe4Xc4BE9Mbn5BHWq9WbAPycNt2LgQ2rW9WtUrUD5RqMaY1UizpgJ_nzyH3cf_FfTl4G-TNi9l03aDnx2QO_RmPVdEf5x7fVsnuAA_WbzJGuOTrMgx7Ka096rKBD-QiQwB6Mej0g/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> <*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.massgeneralbrigham.org/complianceline <https://secure-web.cisco.com/161wYoSeQ60SLehxNmO0vzifJP-2fX3578sFDwd3aaq1zvAM2zxR-NYaYfvmAXNPEFqyTcv51od1UoUhSwKw9PAMaSaN-leX0Yp4McRKSJuDQc2SsJhHL7uFAO9C-quAhLp9Bk8sAcZibmVDIcuNs63uJZa_Ew9H-8BGk0Y-zRD728p9a-MDbYEWBYDEKMsmREn8ZHBJdA9zosJfe4Xc4BE9Mbn5BHWq9WbAPycNt2LgQ2rW9WtUrUD5RqMaY1UizpgJ_nzyH3cf_FfTl4G-TNi9l03aDnx2QO_RmPVdEf5x7fVsnuAA_WbzJGuOTrMgx7Ka096rKBD-QiQwB6Mej0g/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>> .
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Don Se -
Donatas Sederevičius
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Douglas N. Greve